PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10416_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 287aa MW: 31914.8 Da PI: 8.3113

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10416_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	45.9	1.1e-14	105	149	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++ s ++ d+Ak L+v+ ++LKriCR++GI RWP k cra_locus_10416_iso_6_len_1285_ver_3 105 GISRDVLEQHSSQKLGDVAKILKVSRSTLKRICRKNGIFRWPPGK 149 69999*************************************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.683	87	173	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-13	106	149	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-16	203	286	No hit	No description
SMART	SM00666	1.2E-11	207	287	IPR000270	PB1 domain
PROSITE profile	PS51745	18.098	207	287	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-17	208	286	No hit	No description
Pfam	PF00564	4.2E-13	208	286	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MLTAHKTNRT AAPISCTKEL NSSEFVVSHK PXMQGELLAN QDAGAPYSSR TGFSQNIVVQ 60 PNSSSQQLVI VVDDTNVTNV NSSESDHINV HKKQSDVWTL DREYGISRDV LEQHSSQKLG 120 DVAKILKVSR STLKRICRKN GIFRWPPGKA KTSKHGLTEQ EFLQTTQGNV KESTQRNKPL 180 YNPAQEKYSA SNVQTTTNAG EALDDSSIMV KATYKDDIIK FRFPVSSGKL DLEKEIAMRL 240 KLSVGSFKIE YLDEDDEWIL IACDTDIETC VSTLKSPGKT TIKILVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A068V4U1	4e-52	A0A068V4U1_COFCA; Uncharacterized protein