PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10416_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 289aa MW: 32335.2 Da PI: 6.6769

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10416_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	45.8	1.2e-14	107	151	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++ s ++ d+Ak L+v+ ++LKriCR++GI RWP k cra_locus_10416_iso_5_len_1254_ver_3 107 GISRDVLEQHSSQKLGDVAKILKVSRSTLKRICRKNGIFRWPPGK 151 69999*************************************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.683	89	175	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-13	108	151	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.21E-16	205	288	No hit	No description
SMART	SM00666	1.2E-11	209	289	IPR000270	PB1 domain
PROSITE profile	PS51745	18.098	209	289	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-17	210	288	No hit	No description
Pfam	PF00564	4.3E-13	210	288	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSAESLAPTV PRTIYFLXEN VCESGVYFTF FYNHFPGELL ANQDAGAPYS SRTGFSQNIV 60 VQPNSSSQQL VIVVDDTNVT NVNSSESDHI NVHKKQSDVW TLDREYGISR DVLEQHSSQK 120 LGDVAKILKV SRSTLKRICR KNGIFRWPPG KAKTSKHGLT EQEFLQTTQG NVKESTQRNK 180 PLYNPAQEKY SASNVQTTTN AGEALDDSSI MVKATYKDDI IKFRFPVSSG KLDLEKEIAM 240 RLKLSVGSFK IEYLDEDDEW ILIACDTDIE TCVSTLKSPG KTTIKILVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A068V4U1	7e-52	A0A068V4U1_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26