PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10414_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 322aa MW: 35493.6 Da PI: 9.422 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.7e-10 | 261 | 308 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq cra_locus_10414_iso_6_len_1636_ver_3 261 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 308 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-15 | 255 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-9 | 255 | 312 | No hit | No description |
PROSITE profile | PS50888 | 15.618 | 257 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-16 | 257 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 261 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-9 | 263 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MNTSLPEMLH YLNTPENFNR GGGGGGGGGA AKMSVLERQQ ARNKWQQEQL QLQQLPIDYF 60 GSDAQLNVFS VSAQSQHFQD LSNDQNLGGI LTQAMKPDPG LADGIIHFGS IGRDNSSYGV 120 RGYGNFTSFD VNNAVSRTAS CPPAVAAAMA ELATKGKETV LPEKLSSSSG RESFKKRKAD 180 KNHNPKAATE EENEEKKLKG NTEEKDAKLT AEQKSIIKNT ANNNNNKTEP SDTSKENSKV 240 SEVQKPDYIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI 300 INYVQSLQRQ VEVITILFNH KK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105746.1 | 1e-115 | transcription factor bHLH63-like isoform X4 | ||||
Refseq | XP_027105747.1 | 1e-115 | transcription factor bHLH63-like isoform X4 | ||||
Refseq | XP_027112244.1 | 1e-115 | transcription factor bHLH63-like isoform X4 | ||||
Refseq | XP_027112245.1 | 1e-115 | transcription factor bHLH63-like isoform X4 | ||||
Swissprot | Q9ZPW3 | 4e-46 | HBI1_ARATH; Transcription factor HBI1 | ||||
TrEMBL | A0A068TL36 | 1e-105 | A0A068TL36_COFCA; Uncharacterized protein | ||||
STRING | XP_009762311.1 | 7e-95 | (Nicotiana sylvestris) |