PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10414_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 373aa MW: 41303.6 Da PI: 8.5964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10414_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.5e-07	299	340	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + +k Ka +L + ++Y++sLq cra_locus_10414_iso_4_len_1631_ver_3 299 QVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 340 57*****************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.011	289	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0017	295	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-13	299	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.83E-6	301	344	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-13	302	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MNTSLPEMLH YLNTPENFNR GGGGGGGGGA AKMSVLERQQ ARNKWQQEQL QLQQLPIDYF 60 GSDAQLNVFS VSAQSQHFQD LSNDQNLGGI LTQAMKPDPG LADGIIHFGS IGRDNSSYGV 120 RGYGNFTSFD VNNAVSRTAS CPPAVAAAMA ELATKGKETV LPEKLSSSSG RESFKKRKAD 180 KNHNPKAATE EENEEKKLKG NTEEKDAKLT AEQKSIIKNT ANNNNNKTEP SDTSKENSKV 240 SEVQKPDYIH VRARRGQATD SHSLAERVSE EYXTRILLTL VHSGKLYPLI PDIHVKXWQV 300 RREKISERMK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN 360 IDNLIFPGTT PEX

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MNTSLPEMLH YLNTPENFNR GGGGGGGGGA AKMSVLERQQ ARNKWQQEQL QLQQLPIDYF  60
GSDAQLNVFS VSAQSQHFQD LSNDQNLGGI LTQAMKPDPG LADGIIHFGS IGRDNSSYGV  120
RGYGNFTSFD VNNAVSRTAS CPPAVAAAMA ELATKGKETV LPEKLSSSSG RESFKKRKAD  180
KNHNPKAATE EENEEKKLKG NTEEKDAKLT AEQKSIIKNT ANNNNNKTEP SDTSKENSKV  240
SEVQKPDYIH VRARRGQATD SHSLAERVSE EYXTRILLTL VHSGKLYPLI PDIHVKXWQV  300
RREKISERMK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN  360
IDNLIFPGTT PEX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105742.1	1e-122	transcription factor bHLH63-like isoform X1
Refseq	XP_027105743.1	1e-122	transcription factor bHLH63-like isoform X1
Refseq	XP_027105746.1	1e-122	transcription factor bHLH63-like isoform X4
Refseq	XP_027105747.1	1e-122	transcription factor bHLH63-like isoform X4
Refseq	XP_027112240.1	1e-122	transcription factor bHLH63-like isoform X1
Refseq	XP_027112241.1	1e-122	transcription factor bHLH63-like isoform X1
Refseq	XP_027112244.1	1e-122	transcription factor bHLH63-like isoform X4
Refseq	XP_027112245.1	1e-122	transcription factor bHLH63-like isoform X4
TrEMBL	A0A1D9CFP3	1e-111	A0A1D9CFP3_VACCO; Transcription factor BHLH055 (Fragment)
STRING	XP_009762311.1	1e-100	(Nicotiana sylvestris)