PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10414_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 427aa MW: 46615.2 Da PI: 6.52

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10414_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.6e-10	261	308	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq cra_locus_10414_iso_2_len_1979_ver_3 261 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 308 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-15	255	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.53E-10	255	312	No hit	No description
PROSITE profile	PS50888	15.618	257	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-15	257	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-7	261	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	263	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MNTSLPEMLH YLNTPENFNR GGGGGGGGGA AKMSVLERQQ ARNKWQQEQL QLQQLPIDYF 60 GSDAQLNVFS VSAQSQHFQD LSNDQNLGGI LTQAMKPDPG LADGIIHFGS IGRDNSSYGV 120 RGYGNFTSFD VNNAVSRTAS CPPAVAAAMA ELATKGKETV LPEKLSSSSG RESFKKRKAD 180 KNHNPKAATE EENEEKKLKG NTEEKDAKLT AEQKSIIKNT ANNNNNKTEP SDTSKENSKV 240 SEVQKPDYIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI 300 INYVQSLQRQ VEIFPGTTPE FHTIGAASGI NRPATYPSDS LQQVVSCCGL DIGVEPSDMI 360 LRRTLSAPVP IPEALTESPC FDHIQPPLTW DAELQSLYGM ELQQARSSLL SQPCTGFIGG 420 GNVKMEM

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MNTSLPEMLH YLNTPENFNR GGGGGGGGGA AKMSVLERQQ ARNKWQQEQL QLQQLPIDYF  60
GSDAQLNVFS VSAQSQHFQD LSNDQNLGGI LTQAMKPDPG LADGIIHFGS IGRDNSSYGV  120
RGYGNFTSFD VNNAVSRTAS CPPAVAAAMA ELATKGKETV LPEKLSSSSG RESFKKRKAD  180
KNHNPKAATE EENEEKKLKG NTEEKDAKLT AEQKSIIKNT ANNNNNKTEP SDTSKENSKV  240
SEVQKPDYIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI  300
INYVQSLQRQ VEIFPGTTPE FHTIGAASGI NRPATYPSDS LQQVVSCCGL DIGVEPSDMI  360
LRRTLSAPVP IPEALTESPC FDHIQPPLTW DAELQSLYGM ELQQARSSLL SQPCTGFIGG  420
GNVKMEM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105742.1	1e-166	transcription factor bHLH63-like isoform X1
Refseq	XP_027105743.1	1e-166	transcription factor bHLH63-like isoform X1
Refseq	XP_027112240.1	1e-166	transcription factor bHLH63-like isoform X1
Refseq	XP_027112241.1	1e-166	transcription factor bHLH63-like isoform X1
TrEMBL	A0A068TL36	1e-156	A0A068TL36_COFCA; Uncharacterized protein
STRING	XP_008236908.1	1e-124	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6538	23	30