PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10399_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRF

Protein Properties

Length: 488aa MW: 52939.6 Da PI: 7.2029

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10399_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.9	8.4e-24	130	173	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e cra_locus_10399_iso_1_len_2055_ver_3 130 DPEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKPVE 173 79***************************************998 PP
2	QLQ	55.6	1.6e-19	71	105	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa Q+ +L++Q+++yKy++a++PvPp+Ll++i+ cra_locus_10399_iso_1_len_2055_ver_3 71 PFTALQWKELERQAMIYKYMVASLPVPPDLLVPIS 105 8********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-11	70	106	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.849	71	106	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.4E-14	71	104	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.225	130	174	IPR014977	WRC domain
Pfam	PF08879	7.0E-20	131	173	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MAXGGPTLND SGANEVGRST SPRRTRDISR DDVSAANAHG ADNYSASAVT VTNLTTFRSP 60 GGGMAAALGF PFTALQWKEL ERQAMIYKYM VASLPVPPDL LVPISSRNFS DPTAPLGNGS 120 LYGLRYQNRD PEPGRCKRTD GKKWRCSRDV APHQKYCERH MHRGRPRSRK PVEVHPSVDT 180 NNNNKKTRLN NQTPPPLQTN PTGQEADRGF ASSFLGTAGQ IKDPLIHGDA RATAPSISRS 240 LYKEPNRALG WMMSGEMVAT NGVEEQWLHL MDTKRGLPPT ERHSSIYGGT NSSILHHGFA 300 EEPPNLFSYT DLPREEDIHS SRNNDDCHLF LNSDLISLKQ PQMEDYRISR GFIDAWSNGN 360 LETINNEPSI SSSQGKLSPS SLNLSIAMAA DSADHHKDCP PVSNWLPFSS GGPLAEVLQP 420 SYMAGGSNPA SPYASNADSI SPPATSVSSP SGVLQRALFS QSDGSVCNSP NIALSTAPPE 480 LVAFQWLS

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MAXGGPTLND SGANEVGRST SPRRTRDISR DDVSAANAHG ADNYSASAVT VTNLTTFRSP  60
GGGMAAALGF PFTALQWKEL ERQAMIYKYM VASLPVPPDL LVPISSRNFS DPTAPLGNGS  120
LYGLRYQNRD PEPGRCKRTD GKKWRCSRDV APHQKYCERH MHRGRPRSRK PVEVHPSVDT  180
NNNNKKTRLN NQTPPPLQTN PTGQEADRGF ASSFLGTAGQ IKDPLIHGDA RATAPSISRS  240
LYKEPNRALG WMMSGEMVAT NGVEEQWLHL MDTKRGLPPT ERHSSIYGGT NSSILHHGFA  300
EEPPNLFSYT DLPREEDIHS SRNNDDCHLF LNSDLISLKQ PQMEDYRISR GFIDAWSNGN  360
LETINNEPSI SSSQGKLSPS SLNLSIAMAA DSADHHKDCP PVSNWLPFSS GGPLAEVLQP  420
SYMAGGSNPA SPYASNADSI SPPATSVSSP SGVLQRALFS QSDGSVCNSP NIALSTAPPE  480
LVAFQWLS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027161232.1	1e-155	growth-regulating factor 8-like isoform X2
TrEMBL	A0A068U9X5	1e-127	A0A068U9X5_COFCA; Uncharacterized protein
STRING	XP_009597554.1	1e-126	(Nicotiana tomentosiformis)