PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10370_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 282aa MW: 31284.7 Da PI: 9.8038

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10370_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	141.1	8.7e-44	31	188	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......... 65 + kkdrhski T+ g+RdRR+Rls+e+a++fFdLqd LGfdk+skt+eWLl+q++ aike +g+ cra_locus_10370_iso_1_len_1494_ver_3 31 TSKKDRHSKINTAHGPRDRRMRLSLEVARKFFDLQDTLGFDKASKTVEWLLTQSNYAIKEVMGNmplargtgg 103 689******************************************************************** PP TCP 66 ..........ssssaseceaesssssasnsssg......kaaksaakskksqksaasalnlakesrakarara 122 ss+ secea+s ++++ +++ + k + k+k++++ ++ +++a+esr++ar+ra cra_locus_10370_iso_1_len_1494_ver_3 104 ggggggtansVSSTTSECEAVSGIDESGTTNENqpgpasISVKLKIKNKEKKACRTALHKVARESRKNARERA 176 98876533333678666666666655555667764444444477777777777888888****** PP TCP 123 rertrekmrikn 134 r+rt ek+r n cra_locus_10370_iso_1_len_1494_ver_3 177 RKRTMEKKRFIN 188 ****988655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-43	31	184	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.194	33	91	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.879	166	183	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MAADLPKTNN ASDVNESRIT TEKMNITRKR TSKKDRHSKI NTAHGPRDRR MRLSLEVARK 60 FFDLQDTLGF DKASKTVEWL LTQSNYAIKE VMGNMPLARG TGGGGGGGGT ANSVSSTTSE 120 CEAVSGIDES GTTNENQPGP ASISVKLKIK NKEKKACRTA LHKVARESRK NARERARKRT 180 MEKKRFINNG QEIMDHSYLL NRSSYEESGG GIQLGAKFNN HQSNSYDQGL KEAVDYAAAA 240 DHSNLGNWNF PQNAHEISHE QHFTSDFDNY CGKPWEATCN NL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027169185.1	1e-56	transcription factor CYCLOIDEA-like
TrEMBL	A0A068TT00	3e-55	A0A068TT00_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2482	22	56