PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10287_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 668aa MW: 77945 Da PI: 7.7092 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.6 | 4.1e-23 | 60 | 144 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 +fYn+Y+ke GF +r+s+s +++ + +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++ cra_locus_10287_iso_4_len_2419_ver_3 60 NFYNAYGKEQGFGIRVSNSWFRSKRKDRYRAKLSCSSAGFKKKTEAN-----NPRPETRTGCPAMIVIKLVDS 127 6*******************9999999**************998877.....9******************** PP FAR1 74 gkwevtkleleHnHela 90 ++w+v ++el+HnH+++ cra_locus_10287_iso_4_len_2419_ver_3 128 QRWRVVEVELQHNHHVS 144 **************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.3E-21 | 60 | 145 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-23 | 266 | 358 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.235 | 552 | 588 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.4E-6 | 563 | 590 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MEVVCLNSEP TFDEGDEFGD DGNCNTAEHD DEVCRMPQMK REPPMPTIGL EFNSFDEAYN 60 FYNAYGKEQG FGIRVSNSWF RSKRKDRYRA KLSCSSAGFK KKTEANNPRP ETRTGCPAMI 120 VIKLVDSQRW RVVEVELQHN HHVSPEVKRF YKSHKKMILA AKQAQQSKPV TEIHTIKLYR 180 TSTVDGVCNG YSKLEQRDGQ PLIDQSKHLK LKEGDAAAVY NYFCRMKLTN PNFFYLMDLD 240 DEGHLRNIFW ADSRSRCAYN YFCDTVAIDT TSLTCKYEVP LVSFVGVNHH GQSVLLGCGF 300 LGHESVEYFT WMIKSWLTCM LGQHPQVIVT DQSKLLQVAV AEVFPHARHC YSLSSIMQRI 360 PEKLGGLKGY EAIKRQLNKA VYDSLKIAEF ETSWDNLMSQ HGLSNNKWLQ SLYEDRQWWV 420 PVYLKDICFV GIIPVKENEG MKSFFDGYVH KHTSFKEFLD KYDLALQRKN MKEAIGDLES 480 RNSKFELKTK CNFELQLSEV YTKAIFEKFR AEVEGMYACF NTRQVYVNGP ILTFVVKERV 540 EVDGKEKEVK NYEVLCERTQ MEVRCICSLF NFKGYLCRHA LNVLNYNGVE EIPSQYILPR 600 WYRNYKCRFS VDHRLKDVYM NDHVKRYNHL CKHAIQIVEE GFESPERYRA LMQHLEELMS 660 KFTLADDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027182572.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like isoform X2 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A2R6QMP1 | 0.0 | A0A2R6QMP1_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | XP_009801241.1 | 0.0 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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