PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10287_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 668aa MW: 77945 Da PI: 7.7092

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10287_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.6	4.1e-23	60	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 +fYn+Y+ke GF +r+s+s +++ + +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++ cra_locus_10287_iso_3_len_2497_ver_3 60 NFYNAYGKEQGFGIRVSNSWFRSKRKDRYRAKLSCSSAGFKKKTEAN-----NPRPETRTGCPAMIVIKLVDS 127 6*****************9999999**********998877.....9**************** PP FAR1 74 gkwevtkleleHnHela 90 ++w+v ++el+HnH+++ cra_locus_10287_iso_3_len_2497_ver_3 128 QRWRVVEVELQHNHHVS 144 ************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-21	60	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-23	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.235	552	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MEVVCLNSEP TFDEGDEFGD DGNCNTAEHD DEVCRMPQMK REPPMPTIGL EFNSFDEAYN 60 FYNAYGKEQG FGIRVSNSWF RSKRKDRYRA KLSCSSAGFK KKTEANNPRP ETRTGCPAMI 120 VIKLVDSQRW RVVEVELQHN HHVSPEVKRF YKSHKKMILA AKQAQQSKPV TEIHTIKLYR 180 TSTVDGVCNG YSKLEQRDGQ PLIDQSKHLK LKEGDAAAVY NYFCRMKLTN PNFFYLMDLD 240 DEGHLRNIFW ADSRSRCAYN YFCDTVAIDT TSLTCKYEVP LVSFVGVNHH GQSVLLGCGF 300 LGHESVEYFT WMIKSWLTCM LGQHPQVIVT DQSKLLQVAV AEVFPHARHC YSLSSIMQRI 360 PEKLGGLKGY EAIKRQLNKA VYDSLKIAEF ETSWDNLMSQ HGLSNNKWLQ SLYEDRQWWV 420 PVYLKDICFV GIIPVKENEG MKSFFDGYVH KHTSFKEFLD KYDLALQRKN MKEAIGDLES 480 RNSKFELKTK CNFELQLSEV YTKAIFEKFR AEVEGMYACF NTRQVYVNGP ILTFVVKERV 540 EVDGKEKEVK NYEVLCERTQ MEVRCICSLF NFKGYLCRHA LNVLNYNGVE EIPSQYILPR 600 WYRNYKCRFS VDHRLKDVYM NDHVKRYNHL CKHAIQIVEE GFESPERYRA LMQHLEELMS 660 KFTLADDT

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MEVVCLNSEP TFDEGDEFGD DGNCNTAEHD DEVCRMPQMK REPPMPTIGL EFNSFDEAYN  60
FYNAYGKEQG FGIRVSNSWF RSKRKDRYRA KLSCSSAGFK KKTEANNPRP ETRTGCPAMI  120
VIKLVDSQRW RVVEVELQHN HHVSPEVKRF YKSHKKMILA AKQAQQSKPV TEIHTIKLYR  180
TSTVDGVCNG YSKLEQRDGQ PLIDQSKHLK LKEGDAAAVY NYFCRMKLTN PNFFYLMDLD  240
DEGHLRNIFW ADSRSRCAYN YFCDTVAIDT TSLTCKYEVP LVSFVGVNHH GQSVLLGCGF  300
LGHESVEYFT WMIKSWLTCM LGQHPQVIVT DQSKLLQVAV AEVFPHARHC YSLSSIMQRI  360
PEKLGGLKGY EAIKRQLNKA VYDSLKIAEF ETSWDNLMSQ HGLSNNKWLQ SLYEDRQWWV  420
PVYLKDICFV GIIPVKENEG MKSFFDGYVH KHTSFKEFLD KYDLALQRKN MKEAIGDLES  480
RNSKFELKTK CNFELQLSEV YTKAIFEKFR AEVEGMYACF NTRQVYVNGP ILTFVVKERV  540
EVDGKEKEVK NYEVLCERTQ MEVRCICSLF NFKGYLCRHA LNVLNYNGVE EIPSQYILPR  600
WYRNYKCRFS VDHRLKDVYM NDHVKRYNHL CKHAIQIVEE GFESPERYRA LMQHLEELMS  660
KFTLADDT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027182572.1	0.0	protein FAR1-RELATED SEQUENCE 6-like isoform X2
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2R6QMP1	0.0	A0A2R6QMP1_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_009801241.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]