PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10258_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 177aa    MW: 20678 Da    PI: 10.6439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10258_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-17246448
                                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                         WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  cra_locus_10258_iso_1_len_528_ver_3  2 WTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 46
                                         *******************************************97 PP
2Myb_DNA-binding52.61e-165295146
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                         rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  cra_locus_10258_iso_1_len_528_ver_3 52 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 95
                                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.291146IPR017930Myb domain
SMARTSM007173.4E-10148IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-29293IPR009057Homeodomain-like
CDDcd001671.54E-10246No hitNo description
PfamPF002493.5E-15246IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-22253IPR009057Homeodomain-like
PROSITE profilePS5129423.24647101IPR017930Myb domain
SMARTSM007171.3E-145199IPR001005SANT/Myb domain
PfamPF002492.1E-155295IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2354100IPR009057Homeodomain-like
CDDcd001679.87E-77295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
XWTVEEDFTL INYIAHHGEG RWNSLARCAG LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ  60
LLILELHSRW GNRWSKIAQH LPGRTDNEIK NYWRTRVQKH AKQLKCDVNS KQFKDTMRYL  120
WMPRLVERIQ AAASASSSNN SSATATTTVP PPNSTIMSPN MNMDMTNNMQ QQQQQQX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-2329330120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239882.12e-97transcription factor MYB78-like
RefseqXP_015075113.12e-97transcription factor MYB78
SwissprotQ10MB41e-85MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A3Q7GN674e-96A0A3Q7GN67_SOLLC; Uncharacterized protein
STRINGSolyc05g053330.2.16e-97(Solanum lycopersicum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]