PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10224_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 823aa    MW: 89167.6 Da    PI: 5.7614
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10224_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.11.9e-1044407972374
                                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 
                                           +++L+++Ae v++g+  laq++Larl+++ sp g+p+ R+a+y +eAL+  l+++ + ++++ pp      + 
  cra_locus_10224_iso_1_len_2878_ver_3 440 IDQLFKAAELVQTGNPLLAQEILARLNHQLSPMGKPFYRAAFYCKEALQLILHNNLNPCMASSPPF-----SL 507
                                           689***************************************************655555433332.....38 PP

                                  GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147
                                           + ++ a+k fse+sPi++f+++t+Nqa+lea+eg +r+H+iDfdi++G+QW++++q+La R++ +psl+iT++
  cra_locus_10224_iso_1_len_2878_ver_3 508 IFKIGAYKSFSEISPIVQFANFTCNQALLEALEGFDRIHVIDFDIGYGGQWASFMQELALRSGAAPSLKITAF 580
                                           9************************************************************************ PP

                                  GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele.eLrvkpgEalaVnlvlqlhrlldesvs 219
                                           +sp+++++ el  t+e+L +fA+e+++ fef++l +++l++ + +  Lrv+++Ea+aVnl ++ ++    ++s
  cra_locus_10224_iso_1_len_2878_ver_3 581 ASPSTHDQLELGLTRENLMHFASEINIGFEFEILGVDSLNSASWSlPLRVSENEAIAVNLPVSSFSSC--QLS 651
                                           **********************************99999998765358999***********888887..555 PP

                                  GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                                           l+     vL++vk+lsPk+vv v++ +d+++ +F +++++al+ ys l++sl+a    + +  +k+Er+ll++
  cra_locus_10224_iso_1_len_2878_ver_3 652 LPL----VLRFVKQLSPKIVVSVDRGCDRTDLPFSNHVIHALQSYSNLLESLDAV-NVNLDSLQKIERFLLQP 719
                                           555....*********************************************665.34668889********* PP

                                  GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                                            i++v+ ++  +     e+ ++Wr  + ++GF+p+++s+++++qa++++++++++g++ve+++ slvl+W+++
  cra_locus_10224_iso_1_len_2878_ver_3 720 GIEKVLLARYCA----PEKTQHWRTLFLSSGFSPLTFSNFTESQAECVVKRTPVHGFHVEKRQSSLVLCWQRK 788
                                           ********9999....9******************************************************** PP

                                  GRAS 366 pLvsvSaWr 374
                                           +L+s+SaWr
  cra_locus_10224_iso_1_len_2878_ver_3 789 ELISASAWR 797
                                           ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.815413777IPR005202Transcription factor GRAS
PfamPF035146.6E-102440797IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MKGMPLPFDF QGKGVLDLEL LVHNRTLSSS CWNQNLKENC FVDSEPTSVL DTIRSLSPPT  60
SSSTLSSSLG GNSGGAAAVG GCSGGGVAST DTAGVAAVSG NSSTKWHQDA PSTTSSNVAA  120
ESELQPIHQS LEMGSAATAN AAEKCTMEEW ESVLPDSVAA SPSQDQSILP WIMGDVDDPS  180
MANLNKVLQV ACGGVGGGPT ADYEFNGGFG VVDQGFGADP VGQVTNFMSS MNPSMPMSSS  240
VLSGNRANSE KIGFLANSSG NIGMNKLSSP QNPIFPSLSS SLGNIAFNQA QQQLMPQAPP  300
FDSAEMKPPM FNPQVLINQH QTHHQQNPSF FMPLSFGQQE QNLLMPPQAK RHNPGPLGGF  360
EPGCQIPKAS FSDTGQELFM GRQPPPQQQQ QNSMPQGLHH QLQLLPHYLQ QRPAMSPKPK  420
MVGEEMGHCQ QQQQQQQAII DQLFKAAELV QTGNPLLAQE ILARLNHQLS PMGKPFYRAA  480
FYCKEALQLI LHNNLNPCMA SSPPFSLIFK IGAYKSFSEI SPIVQFANFT CNQALLEALE  540
GFDRIHVIDF DIGYGGQWAS FMQELALRSG AAPSLKITAF ASPSTHDQLE LGLTRENLMH  600
FASEINIGFE FEILGVDSLN SASWSLPLRV SENEAIAVNL PVSSFSSCQL SLPLVLRFVK  660
QLSPKIVVSV DRGCDRTDLP FSNHVIHALQ SYSNLLESLD AVNVNLDSLQ KIERFLLQPG  720
IEKVLLARYC APEKTQHWRT LFLSSGFSPL TFSNFTESQA ECVVKRTPVH GFHVEKRQSS  780
LVLCWQRKEL ISASAWRCXG DEFDTGKQFI SATKGACLPA SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3145479718375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106490.10.0scarecrow-like protein 6
TrEMBLA0A068UMM30.0A0A068UMM3_COFCA; Uncharacterized protein
STRINGSolyc01g090950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235