PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10223_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27411.1 Da PI: 7.411 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 4e-09 | 89 | 135 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ R d++N++f eL +ll + K++Ka+iL+ Av+ + +L cra_locus_10223_iso_4_len_1242_ver_3 89 KACREKLRGDKLNERFLELGSLLEAG---KPSKVDKAAILTDAVRMVTQL 135 678**********************9...99**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.354 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.09E-6 | 88 | 138 | No hit | No description |
Pfam | PF00010 | 9.9E-7 | 89 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-7 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-11 | 90 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-12 | 91 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 9.0E-5 | 150 | 184 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGCSENQIQN SNWLFDYDLM MDDISAVSGH NFSGPSPAAS IDFGWTSQAI KSTSTACSEV 60 EHSFGXXXXX KESGSRKRMK CELSAPGSKA CREKLRGDKL NERFLELGSL LEAGKPSKVD 120 KAAILTDAVR MVTQLRSETM KLKQSNEDLQ EKIKELKAEK NELRDEKQRL KAEKDKLEQQ 180 LRALVPQPGF ASVPSTIGTA FTAQKEASGC KLMPFITYSG MPMPMWQFMQ PALVDTSQDH 240 VLHPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274829.2 | 5e-99 | PREDICTED: transcription factor ILR3 isoform X2 | ||||
Swissprot | Q9FH37 | 1e-78 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | F6HIM0 | 1e-97 | F6HIM0_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0059g02650.t01 | 2e-98 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |