PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10223_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 16626.4 Da PI: 9.1354 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.2 | 0.00034 | 4 | 36 | 19 | 54 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +f eL +ll + K++Ka+iL+ Av+ + +L cra_locus_10223_iso_2_len_1283_ver_3 4 RFLELGSLLEAG---KPSKVDKAAILTDAVRMVTQL 36 577888888887...889*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.619 | 1 | 36 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.25E-6 | 4 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-8 | 4 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-4 | 51 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MMLRFLELGS LLEAGKPSKV DKAAILTDAV RMVTQLRSET MKLKQSNEDL QEKIKELKAE 60 KNELRDEKQR LKAEKDKLEQ QLRALVPQPG FASVPSTIGT AFTAQKEASG CKLMPFITYS 120 GMPMPMWQFM QPALVDTSQD HVLHPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274829.2 | 1e-66 | PREDICTED: transcription factor ILR3 isoform X2 | ||||
Swissprot | Q9FH37 | 5e-60 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2G5ERV6 | 8e-67 | A0A2G5ERV6_AQUCA; Uncharacterized protein | ||||
TrEMBL | A0A2G5ERW0 | 3e-67 | A0A2G5ERW0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_005_00425.1 | 2e-66 | (Aquilegia coerulea) |