PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_101999_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 196aa MW: 22360.2 Da PI: 5.0459 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.9 | 4.6e-25 | 88 | 178 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek. 72 +fY +YA++vGF vr ++++s+ +g++ r++ C+k+g+++++k++ r++r++ r gC+a++ v++ + cra_locus_101999_iso_1_len_586_ver_3 88 RFYYDYARRVGFVVRLMQKRRSEIDGKTLARRLGCNKQGFSTSTKTRIGPDRKPRPSARGGCNATILVRLLEk 160 5********************************************************************9888 PP FAR1 73 dgkwevtkleleHnHela 90 +gkw+ t++e+eHnH+l+ cra_locus_101999_iso_1_len_586_ver_3 161 SGKWVCTRFEKEHNHPLV 178 ****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-22 | 88 | 178 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
XDCIWIFKTS PVALLTXNSD LYNWDFSMQS SLTKQGNAAE LEGDDGKFED LEENDVTEKE 60 ESGSQVEGGE VLEPFEGMEF DSEDDARRFY YDYARRVGFV VRLMQKRRSE IDGKTLARRL 120 GCNKQGFSTS TKTRIGPDRK PRPSARGGCN ATILVRLLEK SGKWVCTRFE KEHNHPLVVS 180 DPTEYTNMGD KEKKIX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089611.1 | 3e-69 | protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A2G9G2Z9 | 4e-72 | A0A2G9G2Z9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N00673.1.p | 2e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |