PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_10182_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 29945.5 Da PI: 6.6783 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.4e-20 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa a+++a+++++g cra_locus_10182_iso_2_len_1085_ver_3 70 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDEAALRFKG 119 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-33 | 69 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-39 | 70 | 133 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-14 | 70 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.86E-35 | 70 | 128 | No hit | No description |
PROSITE profile | PS51032 | 24.75 | 70 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-22 | 70 | 128 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-11 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
KVDNRPRHGK RALFHLEASS TTEDKSSQDS LSLPNSIHKN QQLVSDHHSS LLQVQDQAAA 60 GGSGGGAKRH YRGVRQRPWG KWAAEIRDPK KAARVWLGTF ETAEDAALAY DEAALRFKGS 120 KAKLNFPERV QGKTELHYYS DQSIRPTTAS SVRPNSSSNV LDVTNNADAA AAAAAGEQYL 180 YSGADQYNYY PHLLQYAQLL SSSDAEFPYF TSALYNNQQH STSQPILPQQ QDPCNFPSSQ 240 SQSQYGSSSC IPDFVDDYGK DFDPNTPNDH Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 69 | 130 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086884.1 | 4e-60 | ethylene-responsive transcription factor ERF113 isoform X1 | ||||
Refseq | XP_011086885.1 | 4e-60 | ethylene-responsive transcription factor ERF113 isoform X2 | ||||
Swissprot | Q9LYU3 | 4e-42 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A2G3D263 | 5e-56 | A0A2G3D263_CAPCH; Ethylene-responsive transcription factor | ||||
STRING | Gorai.005G197100.1 | 2e-54 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |