PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10082_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 435aa    MW: 48975 Da    PI: 6.2058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10082_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-14229275455
                                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  cra_locus_10082_iso_3_len_1528_ver_3 229 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYVKQLR 275
                                           7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.606225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-19226286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-13229279No hitNo description
PfamPF000103.6E-12229274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-19229291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.5E-5359424No hitNo description
SuperFamilySSF550215.83E-6359430No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
XDPESEVNEK NIRSRLGQNP NSQQCQTEPS ELMQLDMSED IRIGSPDEND GSNNLDSNDY  60
HHRLIHQTRT HHDLFRSETV NRWPAAAMGD PPHINTTTTT LQPPPPTSSE VPAMEELIEE  120
DTHYSQTVST ILQNQSSRSS DTSSSIPYFS CSSYSSFSNW SSDHHHLGTT SSSQWLLKYV  180
LFTVPFLHSK YRSDHENSSP KSRDTASADV GSRIFRRGTA ASQEDLSANH VLAERRRREK  240
LNERFVILRS LVPFVTKMDK ASILGDTIEY VKQLRKRIQD LESRQSDADR RSRSSSGEGR  300
NNAMSTATNN YNQIRKMRII EENIVGGSQG KAVAVGADGE VEVEDVEVEV EVSIIESDAL  360
IEVQCRNREG LLLDIMQMLR ELRVEITAVQ SSVNNGVFAA ELRAKVKDNV NGKRATITEV  420
KRALHHIIRH YSGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14229283862Transcription factor MYC2
5gnj_B2e-14229283862Transcription factor MYC2
5gnj_E2e-14229283862Transcription factor MYC2
5gnj_F2e-14229283862Transcription factor MYC2
5gnj_G2e-14229283862Transcription factor MYC2
5gnj_I2e-14229283862Transcription factor MYC2
5gnj_M2e-14229283862Transcription factor MYC2
5gnj_N2e-14229283862Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238ERRRRE
2234239RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981699.11e-140PREDICTED: basic helix-loop-helix protein A isoform X1
SwissprotE3SXU41e-122BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT41e-139A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGEOX947961e-140(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]