PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10039_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 342aa MW: 38742.1 Da PI: 7.131 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.6 | 1.2e-09 | 136 | 173 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ +qV +WF N R + cra_locus_10039_iso_1_len_1385_ver_3 136 FEHflHPYPKDSEKIMLARQTGLSRSQVANWFINARVR 173 664559******************************88 PP | |||||||
2 | BELL | 82.9 | 4.1e-27 | 17 | 74 | 15 | 72 |
BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +l +rY+qy++q+q+v+ssFe+vag g+a+ Yt+lAl++iS +FrcL+dai++qi cra_locus_10039_iso_1_len_1385_ver_3 17 MLTLGGRRYRQYNQQMQVVASSFEIVAGRGAARRYTALALRTISCQFRCLRDAIKKQI 74 6666679**************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.9E-5 | 1 | 72 | IPR006563 | POX domain |
Pfam | PF07526 | 7.9E-23 | 11 | 70 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.276 | 114 | 177 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.14E-12 | 117 | 178 | No hit | No description |
SMART | SM00389 | 4.4E-10 | 117 | 181 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.9E-18 | 118 | 184 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 120 | 183 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.6E-18 | 134 | 173 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
XNANQEEVDE NSVVYNMLTL GGRRYRQYNQ QMQVVASSFE IVAGRGAARR YTALALRTIS 60 CQFRCLRDAI KKQIQAVQQS LGEHSTMPNG FTRLRYVDQQ LRQQRNLQQF GMLRQPWRPQ 120 RGLPETAVSI LRAWLFEHFL HPYPKDSEKI MLARQTGLSR SQVANWFINA RVRLWKPMIE 180 EMYKEEFGDI EGDSKSSELA QAVARLKSES EDAAGEELHE SSISATADAN QLRQSKKLSS 240 QDGSYEENAM NSESNKSWRN KIVNQTDDQS ITASIKPYEF SMLGGTRVSL ALGLQHSETN 300 PQSGIDGTAA SVGVDKADYF CIDAINQQDR FSNPHLLSDF VV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-17 | 123 | 181 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-17 | 123 | 181 | 5 | 63 | Homeobox protein Meis2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090737.1 | 1e-141 | BEL1-like homeodomain protein 3 | ||||
Swissprot | Q9FWS9 | 3e-81 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | A0A068UFX5 | 1e-139 | A0A068UFX5_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400009610 | 1e-112 | (Solanum tuberosum) |
Publications ? help Back to Top | |||
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