PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre17.g739450.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | NF-YB | ||||||||
Protein Properties | Length: 190aa MW: 19561.1 Da PI: 4.5031 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 50.9 | 3.7e-16 | 1 | 79 | 16 | 94 |
NF-YB 16 imkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++k lP + + ++d+ e+v c +efi +++se+++ + re r i +d ++ al++lGf+++v ++++ l+ ++e Cre17.g739450.t1.1 1 MIKDLLPPDMRCANDTVEMVIACCTEFIQLLSSESNEVATREGRSIIHPDHVMRALTELGFQEFVGEVNAALHTFKEET 79 58999**********************************************************************9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-23 | 1 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-9 | 1 | 56 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.7E-27 | 1 | 120 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MIKDLLPPDM RCANDTVEMV IACCTEFIQL LSSESNEVAT REGRSIIHPD HVMRALTELG 60 FQEFVGEVNA ALHTFKEETK TAHSRKADLR KTGAEQAGLT EEEQIALQQQ MFAAARAQSM 120 TTSEVAASMT ASYDRMAMAA AAAAAAAGGG GGAGGAAGQA PGIAPGLAAP MPPLQGQVPL 180 PDAAPPAEQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-24 | 1 | 116 | 24 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre17.g739450.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001691659.1 | 3e-83 | DR1-like protein, partial | ||||
TrEMBL | A0A2K3CRM2 | 1e-133 | A0A2K3CRM2_CHLRE; Uncharacterized protein | ||||
STRING | EDP04767 | 1e-82 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 | Representative plant | OGRP3449 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 2e-30 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Cre17.g739450.t1.1 |