PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre17.g729600.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family AP2
Protein Properties Length: 1493aa    MW: 150744 Da    PI: 4.425
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre17.g729600.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.5e-10862155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.ae...eAakaaiaarkkleg 55
                        s+y+GV+wdk+r++W A++++  +   +  ++ + +gt +e   +Aa++++a   kl+g
  Cre17.g729600.t1.1  8 SRYRGVSWDKRRKKWQAQYKVK-I---TGGVWKNLHGTlCEreeDAAEQYDAIVYKLRG 62
                        79****************9993.2...25555555555432334********9999997 PP
2AP257.92.5e-18104154156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         s y+GV+w+k +g+W A Ird        k+++lg+f+  eeAa+a++aa+++l+g+
  Cre17.g729600.t1.1 104 SSYRGVTWHKGKGKWMAKIRD------AgKTVHLGYFDNQEEAARAYDAAARRLHGA 154
                         67*******************......44**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-5871IPR016177DNA-binding domain
PfamPF008471.1E-4861IPR001471AP2/ERF domain
PROSITE profilePS5103210.007970IPR001471AP2/ERF domain
SMARTSM003800.074976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-4971IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-18104162IPR016177DNA-binding domain
PfamPF008473.6E-11104153IPR001471AP2/ERF domain
PROSITE profilePS5103217.24105161IPR001471AP2/ERF domain
SMARTSM003805.2E-19105167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18105162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1493 aa     Download sequence    Send to blast
MDEAPRKSRY RGVSWDKRRK KWQAQYKVKI TGGVWKNLHG TLCEREEDAA EQYDAIVYKL  60
RGDAAQLNAP LSEERRAELD EFASVENLIH SWQQTAAKHA SGASSYRGVT WHKGKGKWMA  120
KIRDAGKTVH LGYFDNQEEA ARAYDAAARR LHGAAAKLNF PVEPAADGPP AAARAAAAPL  180
IGGGAGSTGG SRGGQGSDHI HANGGKGGSA GGGAAVGSRP RRPTVPAAPP PPSSALPPMH  240
GSDAAAAAAD GVTAAATADV QQTGQALLEA SRLAGVGGQD HGTLEPPAAG RGAVAVATVD  300
PAAAARPGAA AAVQQDKADC ALPDLVGATA TAADTAAHAE AAAAEVVAAA AAAAQEASAG  360
EGEAVTGLEA PESEDGAGGS SGSSSSSSYN SMYGGEWGDT EDSEVLWSDA ASDGDSDSDW  420
LLQSPHLRPL HVATATAKAT EQQPSPQQHD SGADGGADGG GGSGSRATSL PRRQQGAAGV  480
VQGPPADEPG GVGGDQQQPT AVTPVTALHI DIAATLGPVT SSSRTAAMAA VAAMGAPPIG  540
EQPEAAPLTA PLSAAGGART AIADAQPRHT AGASTPPALR GARRLQALIG PEEELALQEA  600
LLDLIHAGEP QPLQQLQQDP HQQYQQQMEE EGIEAVAAGA RGNGSGGAAA KAVPRDAASR  660
RRGTADAGGG GSTMVADTVA GAAAAAACGG VDMLRSEYLS LAADDEDREL LLRMLPPARG  720
DEDGGGGLGL RLLEGNWREW WDPHEGPRLL RSRWYDLPAD DSELWAGGVS EQLRRRHDAV  780
MSRLERLVAG GGGGGGGGGG SGGGGGGSSG GEWQQTQEQD EAQGPPTDGT GAGGSCGWPG  840
AAAGMAAAGP AAAAHNPFND CVDGDGGELS PPPQQPPAQE PRRRRYFPTA GWAMSLSQRQ  900
RSLHRQLLQQ LQQQQEEEEE EEHGGKAAAG VAAASGGGGN SVAGGGGGGA EGPGGSHGGG  960
GATAAAGMWA PPPPEFLHFL AAGDMAAAGQ VMPAVAPLLV AAGVEPATAE AVAAGRVEAL  1020
PPLPAAAAAA ATSSITDVVR LGSSSSNSAG PRGEQPPAAA ADPRRISSYN AAAVLHRAAV  1080
ETARLEGAPP PPEPNRWTYM GEGSRGPRVA AGLSALGLAA PPPWLANPRE QHKVLRYACE  1140
QLEGDVRRLV SHNAASAAAA GGPLSEARVL AEMEEEIRRL TGDKPDDAME VDSNEDEDAD  1200
AEGEEQEEDI EGVPLGADRP WEWALAPPEP LPPLPPPQLS WEEAVRRAAA ALRRPVPHPI  1260
PPPPTAPAAA PASACGRGTT TATAAAVAAT EAAAAAAGGG SGAAEIGAAA GAAAEAAAFV  1320
DATADEGLLQ LQRSLQGLVG LYGALPVAQE EVEQEEEQGE EAAQGEGQEA GEKELTEQQQ  1380
EQAQENATPE AVAAAEVQEP QEQQQREQEQ TAAEGKEEEE EEAEEHGRPA KRPRLQPPPA  1440
DAATTAADAS GAATVTAAPL PQLRFVTLGE VNLVDLALSL QERSRPGAVL QL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre17.g729600.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CQW40.0A0A2K3CQW4_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1050944
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.12e-10AP2 family protein