PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre16.g695600.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 472aa    MW: 48482.7 Da    PI: 9.7841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre16.g695600.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-09403450347
                         SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                         +WT+  +  lv a kq +++    +W+++a+ ++ gR+  qc  r+  +
  Cre16.g695600.t1.2 403 PWTEAQEVALVAALKQCPKElgaeRWDAVAKLVP-GRSKAQCFKRFKEL 450
                         7*****************99**************.*******9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.2E-2438101IPR001623DnaJ domain
SuperFamilySSF465659.55E-2538110IPR001623DnaJ domain
SMARTSM002716.0E-243994IPR001623DnaJ domain
PROSITE profilePS5007620.08340102IPR001623DnaJ domain
CDDcd062575.01E-194091IPR001623DnaJ domain
PfamPF002262.1E-224099IPR001623DnaJ domain
PRINTSPR006256.1E-134260IPR001623DnaJ domain
PRINTSPR006256.1E-136075IPR001623DnaJ domain
PROSITE patternPS0063607998IPR018253DnaJ domain, conserved site
PRINTSPR006256.1E-1394113IPR001623DnaJ domain
SMARTSM007170.001257309IPR001005SANT/Myb domain
SuperFamilySSF466896.65E-6260307IPR009057Homeodomain-like
CDDcd001673.04E-4260307No hitNo description
PROSITE profilePS500904.774261299IPR017877Myb-like domain
SuperFamilySSF466892.62E-8400450IPR009057Homeodomain-like
SMARTSM007175.2E-6400453IPR001005SANT/Myb domain
PfamPF002491.8E-7403450IPR001005SANT/Myb domain
CDDcd001672.75E-8403450No hitNo description
PROSITE profilePS500907.282403451IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-6403450IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSRCSLALGL FGLLLAGMAG MDGVDAAGSK ITAADLANLN LYKVLGVTAK ATSVEIAKAY  60
RKLAIKYHPD KNPQGQDQFI KIAYAYEILG DETKRARYDA GGFAAATEFA AQAPNWDTWQ  120
PPEAPSATVF EEWQNHNIYY DLAMLVALLA GGAAAWVAWV QASERLKRAR KAARKAAGGG  180
KSAPASGAGS SRPRRQRVQS SGALSTGSGA GMGGSDSDSD EAGGGARADQ PDTAAPGPSG  240
SLLLQPAKPA GGSAAAAMRE WSAEELRLLD KGLKKFPVGT VKRWEAVTGV VRTRTLEEVL  300
VMVKNYKGGS HLRARVQEDW KAGRKAGAAT VAVAASQAAP DIRYDGPPTV NGGPADGEHT  360
AAVAAAVAAT AAATAGGQVL ATGGGTKAAK APAGTEKAGV DAPWTEAQEV ALVAALKQCP  420
KELGAERWDA VAKLVPGRSK AQCFKRFKEL RDAFRSKKGA GGGAEGDDGD D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2och_A7e-18421021171Hypothetical protein dnj-12
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre16.g695600.t1.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2897976e-70AY289797.1 Chlamydomonas reinhardtii GlsA-related protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001699327.13e-99DnaJ-like protein
TrEMBLA0A2K3CS980.0A0A2K3CS98_CHLRE; Uncharacterized protein
STRINGEDO987571e-98(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP118489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.19e-11MYB_related family protein