PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre16.g692500.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | SBP | ||||||||
Protein Properties | Length: 830aa MW: 76192.7 Da PI: 7.6963 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 82.7 | 5e-26 | 64 | 141 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC l++ak y rr+ vCe+h ka+ vl+sg + rfCqqC +f l++f+ ++rsC+ r ++ n rrrk+++ Cre16.g692500.t1.1 64 RCQVDGCGLPLADAKLYLRRYSVCEAHFKAEYVLLSGGRYRFCQQCNKFQPLDNFNGSRRSCKARSEDRNLRRRKQRT 141 6**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-26 | 60 | 126 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 23.29 | 62 | 139 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-24 | 63 | 143 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.0E-28 | 65 | 138 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 830 aa Download sequence Send to blast |
MQSSGDAYAL VAAAAAAAGL SGPGLVQDWR NPGGMGGEDP GYSDGDGDSS RKARKLRKPN 60 DIARCQVDGC GLPLADAKLY LRRYSVCEAH FKAEYVLLSG GRYRFCQQCN KFQPLDNFNG 120 SRRSCKARSE DRNLRRRKQR TDERAMQAGD GGSGGSASGG ADGILGAGIL RMVGSNGDDQ 180 TAAADALAAA VTGGLGAASI VGLGCGGGGG MSAALTAAAA SAMTGSNGTG GGGGGGGAIR 240 LTGKGANLGG LALPARAALD TNGVLKPLEP SQPADADVSA LAGNGGGSQA ALYAALQQLQ 300 ANGAIGGGGG GGMGVGMGMG GGCGMGGAAA GASVTAALAG LLSGGALGGG GSGGGNGLGG 360 NGLGGGLGNG GGGLTGSELV ALQALLGDGS SGISPSTVLQ LLTSATGGGG GGGGGLGVGG 420 APAGGLGLGG GGGPGLSLNR GNNGGAPLDR DLNLQVVQML LSQLDGNNGL AGSAGPGGGL 480 GAGLGGAGGL SALGLRLGDN GGGGAGGGGG LGTLGMQLVG GGNGTGGGGS TSVTAALASA 540 LSSLNGMNGL NGGFNGGLNG GLNGGLNGGL VGGLNGGHGS ALNGGLGGAL NGGLNGGALN 600 GGGNGSGALS VAGLLSALLG GGGGPAPATN SFNGLSNGLS NSLSNSLSNG LSNGLSNGLN 660 NGMVNGSGNS FSNGRSNGLT NGFGNGLSNG LGNGLSNGLG TGLSNGLAGL SQATLASLLA 720 QATGQSGGSG AGLVDGGGGG GYGGGGYGGG GGGGLGGGGG DSFVSAEVQS LLAQMGGGNN 780 AGGGGGGAAH HMLKSLNQQQ PQQQQQQPPY MLLSLDNLAL LQQQQQLQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-18 | 65 | 138 | 11 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | DRNLRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre16.g692500.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3CSF2 | 0.0 | A0A2K3CSF2_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 3e-19 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Cre16.g692500.t1.1 |