PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre16.g689535.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

C3H

Protein Properties

Length: 1265aa MW: 123589 Da PI: 6.4462

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre16.g689535.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.6e-11	911	935	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++Crf++rtG C yG++C F+H++ Cre16.g689535.t1.1 911 APNCRFYMRTGSCGYGASCAFNHPR 935 589********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.9E-6	908	935	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.995	908	936	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-9	911	935	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.73E-5	912	937	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	914	935	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1265 aa Download sequence Send to blast
MGSTLGLDIE DTLAQDRCFV LRERDSQAPT VELDTAALMA AGKDAIKELI DRAWPAAESP 60 LTWARNKLAG YIVSRQTLDM RAGDLFTAPV QEAESYLAAA WTSRMEHRGG GEQEGGRGGA 120 APPDLSAVVC EDACLQLTPA GVKLAFAALL HGSAACLLDD ADGGELAELG MVAVAVEEGG 180 GEEGGAEGEG EEAGGHGHGH SHGGHGHGHG QPYSGHSHHH HHHQQQHQYS GSGQQQQQQG 240 GRVGWPLRPD LLHTYCRAVF GGGPGGGPGS AGEQLALAAA LALVEAGRGG GGGGGLPRGP 300 PGDYDPLRFR LALPALAAEV REAAGPNGGL LTGPGWGVGP LLTRLKERVS KGVFRVLAPE 360 ELQRELEDRA AQAAAAAADA AAEGGGAEGG AGGGGGSGSA AALLADEPAG ELGEWGAEPM 420 PESAPGGGGG GGGGRAAAAA AAAAAAAAAA AAEECSDPVA VLDLDALREC VVEALIRYAE 480 IAFAGPRAAD LVRRTAASHL AARTRSFAGR AHCVRLPVLG RALGEALPPE AGFDPGRLGG 540 LARMVSAESS SAVLHVFKKA IPTPGGGGGG GGGVLNAMQQ HLQLGGAEAG TVGTYVTLNV 600 GKLLTAAGVR ELDGGYGSYN MGAGGGGGVM GGQGGRAGGG YGTAGGGGGY GGRSGGYDSG 660 YGQQQQQAGG AGGGGGGYEQ RRGTRDSYGS SSHTGQPYGG GGGGGGGGGG GEGSAVRQAV 720 VALFLGDTPE PAALRAAALA LISALHSQPG GLLPLSRLEE VVRNYAAART APPLEQLLAA 780 EAEVFEMQEH WPGGPKGVRL KAAAALAKAA RLPPATLAAA AASPAMRPRE GSGAAAAATA 840 PAAPGGAGGG GSFGRLSTAT SIDEYGSAPY HGGGGNSHTY PSSHHNQNGG GGGGSTANDY 900 GEPPYPLRPG APNCRFYMRT GSCGYGASCA FNHPRNRHEE GGGAGEPNSG YGGGGGGGYG 960 HNHQAAAAAA PGGGNEPAWY HTPVPPPAAP APPPPALQLP TAAPVLSGPS VSGGGGGGGG 1020 VGLGGGGMMG PAAAAGLAAA EQTSPLWTAR PVSAPLRSQA LLEVAALPLL WTALSTRLAA 1080 LPGRLSQAAG DRAAADPAGG HHGATNTTTT TTGTGTGGFV PLHLPHQPFA ALGGARPQQQ 1140 QQQQQQQQQQ PYQQQQQQQQ PYHQQQQRTD NRGYGAGGGS GYGATGGGGG GGYGATGGGG 1200 GTRQPGYGGA GYPAAAGGGG GGGGYRDYRN DYGGAGGAAG GGGGGRSDEY GGGGGGRPRG 1260 TGLW*

Sequence ? help Back to Top

Protein Sequence Length: 1265 aa Download sequence Send to blast

MGSTLGLDIE DTLAQDRCFV LRERDSQAPT VELDTAALMA AGKDAIKELI DRAWPAAESP  60
LTWARNKLAG YIVSRQTLDM RAGDLFTAPV QEAESYLAAA WTSRMEHRGG GEQEGGRGGA  120
APPDLSAVVC EDACLQLTPA GVKLAFAALL HGSAACLLDD ADGGELAELG MVAVAVEEGG  180
GEEGGAEGEG EEAGGHGHGH SHGGHGHGHG QPYSGHSHHH HHHQQQHQYS GSGQQQQQQG  240
GRVGWPLRPD LLHTYCRAVF GGGPGGGPGS AGEQLALAAA LALVEAGRGG GGGGGLPRGP  300
PGDYDPLRFR LALPALAAEV REAAGPNGGL LTGPGWGVGP LLTRLKERVS KGVFRVLAPE  360
ELQRELEDRA AQAAAAAADA AAEGGGAEGG AGGGGGSGSA AALLADEPAG ELGEWGAEPM  420
PESAPGGGGG GGGGRAAAAA AAAAAAAAAA AAEECSDPVA VLDLDALREC VVEALIRYAE  480
IAFAGPRAAD LVRRTAASHL AARTRSFAGR AHCVRLPVLG RALGEALPPE AGFDPGRLGG  540
LARMVSAESS SAVLHVFKKA IPTPGGGGGG GGGVLNAMQQ HLQLGGAEAG TVGTYVTLNV  600
GKLLTAAGVR ELDGGYGSYN MGAGGGGGVM GGQGGRAGGG YGTAGGGGGY GGRSGGYDSG  660
YGQQQQQAGG AGGGGGGYEQ RRGTRDSYGS SSHTGQPYGG GGGGGGGGGG GEGSAVRQAV  720
VALFLGDTPE PAALRAAALA LISALHSQPG GLLPLSRLEE VVRNYAAART APPLEQLLAA  780
EAEVFEMQEH WPGGPKGVRL KAAAALAKAA RLPPATLAAA AASPAMRPRE GSGAAAAATA  840
PAAPGGAGGG GSFGRLSTAT SIDEYGSAPY HGGGGNSHTY PSSHHNQNGG GGGGSTANDY  900
GEPPYPLRPG APNCRFYMRT GSCGYGASCA FNHPRNRHEE GGGAGEPNSG YGGGGGGGYG  960
HNHQAAAAAA PGGGNEPAWY HTPVPPPAAP APPPPALQLP TAAPVLSGPS VSGGGGGGGG  1020
VGLGGGGMMG PAAAAGLAAA EQTSPLWTAR PVSAPLRSQA LLEVAALPLL WTALSTRLAA  1080
LPGRLSQAAG DRAAADPAGG HHGATNTTTT TTGTGTGGFV PLHLPHQPFA ALGGARPQQQ  1140
QQQQQQQQQQ PYQQQQQQQQ PYHQQQQRTD NRGYGAGGGS GYGATGGGGG GGYGATGGGG  1200
GTRQPGYGGA GYPAAAGGGG GGGGYRDYRN DYGGAGGAAG GGGGGRSDEY GGGGGGRPRG  1260
TGLW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	633	639	GGRAGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre16.g689535.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3CW83	0.0	A0A2K3CW83_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12626	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	4e-10	C3H family protein

Link Out ? help Back to Top
Phytozome	Cre16.g689535.t1.1