PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre16.g686250.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 948aa MW: 96829.5 Da PI: 4.8919

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre16.g686250.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.2	3.9e-13	15	56	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++E +v+ ++qlG++ W+++a +++ gRt++++k+ w++ Cre16.g686250.t1.1 15 PWTEDELNTIVHIHAQLGNR-WSRVALHLP-GRTENDIKNLWHS 56 8*****************.*****.*******9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.08	8	62	IPR017930	Myb domain
SMART	SM00717	7.4E-7	12	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.03E-10	13	63	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-16	15	57	IPR009057	Homeodomain-like
Pfam	PF00249	8.1E-12	15	55	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-8	15	55	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MALVPDDEND RPWKPWTEDE LNTIVHIHAQ LGNRWSRVAL HLPGRTENDI KNLWHSTARG 60 KNISRASTLL IDYVRAVAAH CDRPEARLAA LEHALKQKQQ LQQERLEQEL QLQLGQAPQQ 120 QQHSTPANNC QEDAADAAAA ALIDSSSVGD PAFLDSCCNT AAAAAAGNRQ QQQMPAVMDL 180 AADVLCDNAG GGAVAVLAKQ QPVAAAAVEG GWVAPSSSAA ATTAAQQLRG RGRQGREQGK 240 EALPAAAAAA PAAPAALLHR FMDDYHLQPH QPQVEEEEAV EAVEAEEDHQ QHAQHQNEHQ 300 KQRQQQQQQQ PAAAAAAGTT DALDELLDQI DLMDAMVLAE PLSSVAAGGD RDEEQGGGGG 360 GGGQMEEDEM AAAPPMVMLR KWLPAAARRQ QQQQQQPQQQ GAQQVGRWEA VAAAGSAVAA 420 AEPAAVAAAE LARVMEYAEE QEQQQQQQLL LLPVDAMQQL QPQLQPQLPL LQQLQTSLSG 480 IIAGDRSGGR SGDLGNSSSR LLLLSAAHAS SLSAAAAAAA AAQQWVGDPP LLMSAQHHQC 540 VYPPQLSSAA AAVAGAAASW SCPPLPPLSP AVAVAALSHT TASAGGDRFA GGTVTAPLLG 600 PPPRPAAAFT RPSSCFDIFE AAAVASSAAA TRRGGGVLVG SVPDSSSGCL PNQLLLQPPS 660 PPHHAALWGA AASSSSGAAA AGMHTSSAAA TADALAAACC TLAHTGACTT AGTTGGGTLC 720 NFPNISFVAA GGTAAGGGGG SGTLPQLLDA NGSHHRQSAG SWGAPQYMLQ QQQPQQQLLQ 780 WAQQLQHGPR SSGLLLAAST SENCGGGAYG GGYGGGGGGR RSNLAPAFNA TGSDSYIFLP 840 SQEQYVRQPQ QQQRLHSSCK QLSAIAAATA AATAAAAASP FATPVAIGGA AAAATSLAAW 900 PAAVLTDVYV TLGKDDLDMD GVWEAVAAAA AGDCGGCSSS SYAMMEM*

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MALVPDDEND RPWKPWTEDE LNTIVHIHAQ LGNRWSRVAL HLPGRTENDI KNLWHSTARG  60
KNISRASTLL IDYVRAVAAH CDRPEARLAA LEHALKQKQQ LQQERLEQEL QLQLGQAPQQ  120
QQHSTPANNC QEDAADAAAA ALIDSSSVGD PAFLDSCCNT AAAAAAGNRQ QQQMPAVMDL  180
AADVLCDNAG GGAVAVLAKQ QPVAAAAVEG GWVAPSSSAA ATTAAQQLRG RGRQGREQGK  240
EALPAAAAAA PAAPAALLHR FMDDYHLQPH QPQVEEEEAV EAVEAEEDHQ QHAQHQNEHQ  300
KQRQQQQQQQ PAAAAAAGTT DALDELLDQI DLMDAMVLAE PLSSVAAGGD RDEEQGGGGG  360
GGGQMEEDEM AAAPPMVMLR KWLPAAARRQ QQQQQQPQQQ GAQQVGRWEA VAAAGSAVAA  420
AEPAAVAAAE LARVMEYAEE QEQQQQQQLL LLPVDAMQQL QPQLQPQLPL LQQLQTSLSG  480
IIAGDRSGGR SGDLGNSSSR LLLLSAAHAS SLSAAAAAAA AAQQWVGDPP LLMSAQHHQC  540
VYPPQLSSAA AAVAGAAASW SCPPLPPLSP AVAVAALSHT TASAGGDRFA GGTVTAPLLG  600
PPPRPAAAFT RPSSCFDIFE AAAVASSAAA TRRGGGVLVG SVPDSSSGCL PNQLLLQPPS  660
PPHHAALWGA AASSSSGAAA AGMHTSSAAA TADALAAACC TLAHTGACTT AGTTGGGTLC  720
NFPNISFVAA GGTAAGGGGG SGTLPQLLDA NGSHHRQSAG SWGAPQYMLQ QQQPQQQLLQ  780
WAQQLQHGPR SSGLLLAAST SENCGGGAYG GGYGGGGGGR RSNLAPAFNA TGSDSYIFLP  840
SQEQYVRQPQ QQQRLHSSCK QLSAIAAATA AATAAAAASP FATPVAIGGA AAAATSLAAW  900
PAAVLTDVYV TLGKDDLDMD GVWEAVAAAA AGDCGGCSSS SYAMMEM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre16.g686250.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3CUP9	0.0	A0A2K3CUP9_CHLRE; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	2e-12	myb domain protein 55

Link Out ? help Back to Top
Phytozome	Cre16.g686250.t1.1