PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre16.g675100.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | CO-like | ||||||||
Protein Properties | Length: 1164aa MW: 119252 Da PI: 5.1672 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.1 | 1.1e-05 | 37 | 66 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ + + ++ +Ce++++llC++C + H Cre16.g675100.t1.1 37 QCTWCLSP-AITYCESDKVLLCKSCDVRLHT 66 69999988.*****************99995 PP | |||||||
2 | CCT | 54.5 | 4.3e-19 | 1097 | 1140 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re+++ R++eKrk+R+F+K irY++RK +Ae RpR++GrF++++ Cre16.g675100.t1.1 1097 REERVARFREKRKRRNFDKVIRYATRKYYAEVRPRIRGRFARRE 1140 9****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 6.0E-14 | 1097 | 1139 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.755 | 1097 | 1139 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1164 aa Download sequence Send to blast |
MTPTCCVLAP AGAFPAGTAV TTAHLGSSSP AAAHSGQCTW CLSPAITYCE SDKVLLCKSC 60 DVRLHTSGLV ASRHLRRIPC QSCFGRGAAL RCRDCARGYY CEQCHDAIVA AVPTPGVCDP 120 KDSRGLPPAH QTTPVGLLAP LPALPQDLLS DDPFMADALT CADVAAAAAG GPVAAHCRDD 180 EEEEEDGGCT AAAAAAHSAS GFAHAPSSSG GAGSTPASSV TVAVVARQRP AAPRVAGKWR 240 GGISVTAAVL AAAAAAAATA AAADEEAAGS EEEPETPEEN EPEAEARVED EGQEAGEDAE 300 MEDCAAAVPA AAAAGATTTA CAMAEAAAGT GAAGDGHDPQ QVEILVPLCR VPSSSAGGGG 360 LCAACRGGVP PFDAEEAEPH EIGVAAVERE AVGGGKDGSS GGCQWQQGGM AACPRTACLV 420 CAAALPARCR RALSSMGSDD YDDAEMEQCD VAIEKEEEEA LAAAAASAGG RRGGAGASSA 480 PAAGVGVRLV PVWGHAKAAV VAGRELERGT AAACACFGKW CGYVSALRDG QLTSIGHAAL 540 QHRHEAAEAA GGAVTEPTEA DAGVGFEAEA FSRQGSFSTS MQEAQQALQL QELLEDDHTP 600 PPPAAGPYER QFPSLAGAVQ QLPQHDQALP LAVAMAPPAP PLAAVAPAAE AAGAEAGVEA 660 GDAEDMFAGM AGLSEQEQRR MLLQQLEELR QQEQARLQHM HWLQQQQQQQ QALHMHHQVH 720 MQQVHMQLMA CTPHAQQLHP QPQEPVQQPT QPAAHATDMD MNIDGTRHGG SASLTPPAPW 780 AHVQMIPQQA PMPAPPQQQS QPFGILPMQQ GQPPYPVQLY QQHLAEQYEA PFSYTAEAGI 840 CRPEVPPLPP QQQQPPQAQL QQQQQVPFTR RMSEADSTSP FASSAIAGVP ATPSTPSDAA 900 PPAPPAPATM AAAAAAAAAA AAPPAKPPAP GVPAARAAVQ PPPQGSLLHR GPSLNGGIRK 960 PPPPPVITVI KRGPDGSILH KCSAPPPAVR RSVNGKRDDV PAAAGARAAA PVVAVDTKAT 1020 EAAANTSAAA VPTSAFSTTR AAVAAVAPGV AAQQQRNTPA YAPITTPQAT AYAAQVLAAA 1080 AAAAAGSGAS GVRELTREER VARFREKRKR RNFDKVIRYA TRKYYAEVRP RIRGRFARRE 1140 EIEAWKMAHG GPDVEVPAVL DDD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre16.g675100.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001695832.1 | 0.0 | predicted protein, partial | ||||
TrEMBL | A0A2K3CVG6 | 0.0 | A0A2K3CVG6_CHLRE; Uncharacterized protein | ||||
STRING | EDP01169 | 0.0 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP611 | 11 | 12 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 8e-12 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Cre16.g675100.t1.1 |