PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre16.g674890.t1.1
Common NameCGLD5B, CHLREDRAFT_205920
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family ERF
Protein Properties Length: 656aa    MW: 63885.4 Da    PI: 6.6305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre16.g674890.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19375425155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr+++ +g+++AeIrdp     +  r +lg+++taeeAa a+++a+++++g
  Cre16.g674890.t1.1 375 CKYRGVRQRP-WGKYAAEIRDPH----KgCRLWLGTYDTAEEAALAYDKAAREIRG 425
                         79********.**********73....359************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.22E-31375435No hitNo description
PfamPF008471.9E-13375425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-31376434IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22376433IPR016177DNA-binding domain
SMARTSM003801.5E-38376439IPR001471AP2/ERF domain
PROSITE profilePS5103223.42376433IPR001471AP2/ERF domain
PRINTSPR003676.7E-10377388IPR001471AP2/ERF domain
PRINTSPR003676.7E-10399415IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0042991Biological Processtranscription factor import into nucleus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MMHLDAKAKH SLLALDAASL GLALPGTSPP AAPLPVPGVK PPGAAGVAAL PPGSLPFGAA  60
TQFGQVPFFA GLPFPLPGGV PPPLPGLPPL SSAAAAAAAA AHAHAAAAAH AAAAMTIAQA  120
AAAAEAAPGK GRIGAIAASA AAATDPNIAV PTPPIAASPP TEPSDGSSPA TSHGSKDGAA  180
GDAVKTEPGA NTAAPGGALS SLGAIAAAAQ AATAGMAVPP SLWLGQPGSA GSAFQALAMP  240
MPPFPPNLAR TSVGGDGSVQ PGTSAPAHSD APSAPAPSGR PPLAPGMPGN LPSSLADHPA  300
AGICSTSYRS SGSHLGMPGG ALGASPPSLG TSPAAIKLPG RRRTSSTNLL SSSLGAKASS  360
SVPSLSVKPD KSGACKYRGV RQRPWGKYAA EIRDPHKGCR LWLGTYDTAE EAALAYDKAA  420
REIRGPRAVV NFPNVNHANL PAPQPHGDDE SGAWDPLGTT SLGTSPVSSG FIPGSSPLMG  480
GSAPVRHGMH PHHHLHGGAF SHHPGVAPSS GLGLRSTFGG YPVRREPTEP IAEGESDVDM  540
DDGEEGEDGD GDDMDEGVGP RSGRARMKVN VVTGVGGRTR PSRPAAAAAV AAAAAAAAGG  600
GVDLEDSDGA PPPPQPSMAG GASRGGGGKR NQVSMDVEDE LAELADALLL LHESA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-23377433663ATERF1
3gcc_A7e-23377433663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.114440.0normal conditions| nutrient deficiency
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre16.g674890.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001699213.10.0AP2-domain transcription factor
TrEMBLA0A2K3CU110.0A0A2K3CU11_CHLRE; Uncharacterized protein
STRINGEDO988530.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-18ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]
  2. Kilaru A, et al.
    Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.
    BMC Plant Biol., 2015. 15: p. 203
    [PMID:26276496]