PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre16.g673250.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

SBP

Protein Properties

Length: 2632aa MW: 254635 Da PI: 6.0881

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre16.g673250.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	82.2	6.9e-26	122	200	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-..------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLak..hnerrrkkq 77 +Cqv gC l+ +k y+ rh+vCe hskapv ++ g r CqqCs+fh+++ f+ +kr+Cr +L++ n+r r+++ Cre16.g673250.t1.1 122 ACQVLGCGLSLAGMKGYFLRHRVCEEHSKAPVLIIGGAPSRLCQQCSKFHHVNAFEGAKRTCRVQLDRirINKRARRTR 200 5*****************************************************************9633588877764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-26	116	184	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.897	120	197	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.71E-24	121	197	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.2E-24	123	196	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2632 aa Download sequence Send to blast
MASEEADLEL WDLDIAEPAA EAGHWNLTGY TWDPVHLTAT RKPAEAPGPQ AQMYGRTCAD 60 DSGVSQQPTA QQLQQQGSGC AVMDCEGGAL VVDGADGPCN IDHAALATAP VYSPQPGGNK 120 MACQVLGCGL SLAGMKGYFL RHRVCEEHSK APVLIIGGAP SRLCQQCSKF HHVNAFEGAK 180 RTCRVQLDRI RINKRARRTR KMNAAAAAAA AATGLDDGGG VMGVRMGMGM GSECPAPPAS 240 GLRSKRPADS SGSGEGSYTD SRKARHLGGP AGAGAMAAAA AAAAAAAAAA AAAFNAGGVR 300 IAGGAPVTLV TPLALAQALS GCAPGGAAAA AGVGSPETDP LLPESGGSGS DGSREHPRAS 360 VGLSGQTGWR YGEPQSSMQP MSPATAMAGG AAATALVAHS PASGMTGPDG GGGGGMHASL 420 STHALQQYGN NSNNNNPYGQ AHVGGMGQMD AGGPGSIAAA AAAAGLGHPA AGMPGAAAAA 480 QSAPRMFAAH QQMAAAAVAA AAAAAVAGQQ QRQQESGVGS HGGGGGQQDA TASAWSLQVG 540 GSGADGTGGL PAVPSANNLH PLLQQEMLLQ QQQQQQQQPK LAAAVAAAAA AWQPKPCSDP 600 IMRGSLREHC SRDLHSAALS DMALATGSGM GAGGATAGSH PSPHVQTLAA NVLAGSPQEM 660 LLIQQAMLKS SAPQGCVPSL AGPDSGSGGV DPALVAMLNG SAPPALPGMP QTLAGCAAIG 720 GAGGAGGRML TASGAVIATM PSASAASGGA RSANTLAGAL GNAAAANSNP ISRRDGDALA 780 SGGNNDSGRP ARMSLENDDA ILAPGDDALL GSLMDLLTTQ NADLGGVGGS NNTGGNGANG 840 THGGVMGASG GANGSLVGLS GLSGLGMGGS GMGGMGGMGG GGSGNAKAAA IAALTGGGSA 900 AANNNGGAAS NHHNHHNGGH TNHGSAMLLG GSNDLRLQSW GLSALGSGFS SGRGGQQLLL 960 QGVPGFSHGL SGGAGGGGSN TGSLAALAAG AGGLQGAMDL AAAAAAGGAA MSRAGSAAAG 1020 GAAGAPGGSA NAMAALSPPN LEALMALPPG SSASTVGLGS LGIGRTLLLE QGLGSLGGLS 1080 ALGGMSPLGG SNALVGSQLG SLSQLAGSHL GGLSQLGGSQ EQLLAGLGSM GSVGAGFAGA 1140 GQGSAAAAAA AAAAAAAGGD LLLQRQLLHA QAQQQQQQHV QQQQQIQLLQ QQQQALAQQQ 1200 QLLQLQQAQA AALAANATAA SAAPAVPAAG LLLSRLLDAD TKTHHLSSEL NGCLAEKQLL 1260 RRQLMLTLQS GQAPDADQVA AAAMAAAATG NAMASMTAGA PAGAAAVGPG AAAVAGLGSL 1320 AGLGVAPAVA LGAARASPAA QLQALMDARS AATAGVPAAV ATAATSPQMA AAAAPAAGTG 1380 GYAAPDLLTR VSLKIMNCLP DELPPDVRSR MQAFASQAPL DLVQGCLRPG CTEVVLDALH 1440 AGDERALVAE LLRQGDVEAA AAALLAALPS SLHCKDIYLQ AADQALYLRP GAPPKRASWA 1500 GVAMRRGGQR VAKPELLAAE APVLHMDHSA MDGSRYVRLR VFGRHLDGAG VTVLARMGGL 1560 ALAVTLTPVD VNGDGKSRAA AAPPSSVVLT EQEADSCPTS GRHAPAAAAA ATPTTSEATA 1620 PAPPPPQLEA SGVSLSAPPA SPSPPPAAST SPQPALPGTS SPSCTAASPA PTTSSAAAAA 1680 APYSLYDVEI EIPPAAPSQG LLILEPRAGV LLGSWAPVLL LEDAGAAAEA AAMLRGLDAD 1740 AARRLVVSLG LFVDHGERCA AVLEAEEAEA EVGCADDVEL EAEEAEEGGD EVGGDCEERQ 1800 GESMVGVQQQ GGVEAATPRA AGARATSSCA HSVAVPAARG ADGQPLAVAA AAVNAMDAAA 1860 EETMAGVAAA EAGAGSPGAA GRRDWHAVFG PSHERIVGMG RTLLAYSALR ACPGLLSYLG 1920 SQLVEMGQPL AALPAATYNG APLLACATLA GGGAVLRIAA EWAARGGAMP DWRAQVPGQP 1980 VGATLLHLAV SLPPPAAVAA LEVMWALALA GPAQPADADS FAAAWFSGQT AADAAAAALN 2040 GCVLLDSPAV LFGAVSRAAL AAANPATAAV ALAAATASET LDRLCIARLA SSYIRTHNYT 2100 SPLDHVDLPS MEANSSVGSG AGRRDAAAAA AQNMDATSSP RQRCSREQHA AGAAAAAALH 2160 DLHDCLLPDF DGLDEDEHRQ GAANAGDSAT GAVNSGSGER VRDLVTEDYA FAHRSSRQLM 2220 AASPGGGADD RSGHGSVGGV PAFLMSPNGV TPAAFSPTDV PSIATASPPR MRVVVAPKAL 2280 AQSVAVAAAG GAAGAAAAAA AAAAAGGSGS AWHASGADAS LVPPSNFTLA SSGVCASGSM 2340 PVFGSSTTAA GITGVYGGSL GLSSYGVMAG SMAGAAGMAA LKGCGGGGAA SSHAGASADG 2400 ATGMAAGAGH RGAPLPMEPL LNMCRPLPGS PASSSDPQQH VLSTDALAVL PNSRAGVPAL 2460 MQVPQQPAAP PQQPATDRPS ASAARPVPAA PAPVPAAAVM PASPPELWPG VVICGSAPAA 2520 PTGGLALAAD GDASAHGGSV VHSSDGRGFP APRRLHTLPA AASGHGGSLM DRAMSAAAAA 2580 EMEAAVQAAA AAGGGGRFPM RDLMKKFKSM FKRSPGTGGA GSESDTSNHR S*

Sequence ? help Back to Top

Protein Sequence Length: 2632 aa Download sequence Send to blast

MASEEADLEL WDLDIAEPAA EAGHWNLTGY TWDPVHLTAT RKPAEAPGPQ AQMYGRTCAD  60
DSGVSQQPTA QQLQQQGSGC AVMDCEGGAL VVDGADGPCN IDHAALATAP VYSPQPGGNK  120
MACQVLGCGL SLAGMKGYFL RHRVCEEHSK APVLIIGGAP SRLCQQCSKF HHVNAFEGAK  180
RTCRVQLDRI RINKRARRTR KMNAAAAAAA AATGLDDGGG VMGVRMGMGM GSECPAPPAS  240
GLRSKRPADS SGSGEGSYTD SRKARHLGGP AGAGAMAAAA AAAAAAAAAA AAAFNAGGVR  300
IAGGAPVTLV TPLALAQALS GCAPGGAAAA AGVGSPETDP LLPESGGSGS DGSREHPRAS  360
VGLSGQTGWR YGEPQSSMQP MSPATAMAGG AAATALVAHS PASGMTGPDG GGGGGMHASL  420
STHALQQYGN NSNNNNPYGQ AHVGGMGQMD AGGPGSIAAA AAAAGLGHPA AGMPGAAAAA  480
QSAPRMFAAH QQMAAAAVAA AAAAAVAGQQ QRQQESGVGS HGGGGGQQDA TASAWSLQVG  540
GSGADGTGGL PAVPSANNLH PLLQQEMLLQ QQQQQQQQPK LAAAVAAAAA AWQPKPCSDP  600
IMRGSLREHC SRDLHSAALS DMALATGSGM GAGGATAGSH PSPHVQTLAA NVLAGSPQEM  660
LLIQQAMLKS SAPQGCVPSL AGPDSGSGGV DPALVAMLNG SAPPALPGMP QTLAGCAAIG  720
GAGGAGGRML TASGAVIATM PSASAASGGA RSANTLAGAL GNAAAANSNP ISRRDGDALA  780
SGGNNDSGRP ARMSLENDDA ILAPGDDALL GSLMDLLTTQ NADLGGVGGS NNTGGNGANG  840
THGGVMGASG GANGSLVGLS GLSGLGMGGS GMGGMGGMGG GGSGNAKAAA IAALTGGGSA  900
AANNNGGAAS NHHNHHNGGH TNHGSAMLLG GSNDLRLQSW GLSALGSGFS SGRGGQQLLL  960
QGVPGFSHGL SGGAGGGGSN TGSLAALAAG AGGLQGAMDL AAAAAAGGAA MSRAGSAAAG  1020
GAAGAPGGSA NAMAALSPPN LEALMALPPG SSASTVGLGS LGIGRTLLLE QGLGSLGGLS  1080
ALGGMSPLGG SNALVGSQLG SLSQLAGSHL GGLSQLGGSQ EQLLAGLGSM GSVGAGFAGA  1140
GQGSAAAAAA AAAAAAAGGD LLLQRQLLHA QAQQQQQQHV QQQQQIQLLQ QQQQALAQQQ  1200
QLLQLQQAQA AALAANATAA SAAPAVPAAG LLLSRLLDAD TKTHHLSSEL NGCLAEKQLL  1260
RRQLMLTLQS GQAPDADQVA AAAMAAAATG NAMASMTAGA PAGAAAVGPG AAAVAGLGSL  1320
AGLGVAPAVA LGAARASPAA QLQALMDARS AATAGVPAAV ATAATSPQMA AAAAPAAGTG  1380
GYAAPDLLTR VSLKIMNCLP DELPPDVRSR MQAFASQAPL DLVQGCLRPG CTEVVLDALH  1440
AGDERALVAE LLRQGDVEAA AAALLAALPS SLHCKDIYLQ AADQALYLRP GAPPKRASWA  1500
GVAMRRGGQR VAKPELLAAE APVLHMDHSA MDGSRYVRLR VFGRHLDGAG VTVLARMGGL  1560
ALAVTLTPVD VNGDGKSRAA AAPPSSVVLT EQEADSCPTS GRHAPAAAAA ATPTTSEATA  1620
PAPPPPQLEA SGVSLSAPPA SPSPPPAAST SPQPALPGTS SPSCTAASPA PTTSSAAAAA  1680
APYSLYDVEI EIPPAAPSQG LLILEPRAGV LLGSWAPVLL LEDAGAAAEA AAMLRGLDAD  1740
AARRLVVSLG LFVDHGERCA AVLEAEEAEA EVGCADDVEL EAEEAEEGGD EVGGDCEERQ  1800
GESMVGVQQQ GGVEAATPRA AGARATSSCA HSVAVPAARG ADGQPLAVAA AAVNAMDAAA  1860
EETMAGVAAA EAGAGSPGAA GRRDWHAVFG PSHERIVGMG RTLLAYSALR ACPGLLSYLG  1920
SQLVEMGQPL AALPAATYNG APLLACATLA GGGAVLRIAA EWAARGGAMP DWRAQVPGQP  1980
VGATLLHLAV SLPPPAAVAA LEVMWALALA GPAQPADADS FAAAWFSGQT AADAAAAALN  2040
GCVLLDSPAV LFGAVSRAAL AAANPATAAV ALAAATASET LDRLCIARLA SSYIRTHNYT  2100
SPLDHVDLPS MEANSSVGSG AGRRDAAAAA AQNMDATSSP RQRCSREQHA AGAAAAAALH  2160
DLHDCLLPDF DGLDEDEHRQ GAANAGDSAT GAVNSGSGER VRDLVTEDYA FAHRSSRQLM  2220
AASPGGGADD RSGHGSVGGV PAFLMSPNGV TPAAFSPTDV PSIATASPPR MRVVVAPKAL  2280
AQSVAVAAAG GAAGAAAAAA AAAAAGGSGS AWHASGADAS LVPPSNFTLA SSGVCASGSM  2340
PVFGSSTTAA GITGVYGGSL GLSSYGVMAG SMAGAAGMAA LKGCGGGGAA SSHAGASADG  2400
ATGMAAGAGH RGAPLPMEPL LNMCRPLPGS PASSSDPQQH VLSTDALAVL PNSRAGVPAL  2460
MQVPQQPAAP PQQPATDRPS ASAARPVPAA PAPVPAAAVM PASPPELWPG VVICGSAPAA  2520
PTGGLALAAD GDASAHGGSV VHSSDGRGFP APRRLHTLPA AASGHGGSLM DRAMSAAAAA  2580
EMEAAVQAAA AAGGGGRFPM RDLMKKFKSM FKRSPGTGGA GSESDTSNHR S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre16.g673250.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3CVK4	0.0	A0A2K3CVK4_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12567	2	2
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	6e-18	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Cre16.g673250.t1.1