PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre16.g673250.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family SBP
Protein Properties Length: 2632aa    MW: 254635 Da    PI: 6.0881
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre16.g673250.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP82.26.9e-26122200177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-..------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLak..hnerrrkkq 77 
                         +Cqv gC   l+ +k y+ rh+vCe hskapv ++ g   r CqqCs+fh+++ f+ +kr+Cr +L++   n+r r+++
  Cre16.g673250.t1.1 122 ACQVLGCGLSLAGMKGYFLRHRVCEEHSKAPVLIIGGAPSRLCQQCSKFHHVNAFEGAKRTCRVQLDRirINKRARRTR 200
                         5*****************************************************************9633588877764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-26116184IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.897120197IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-24121197IPR004333Transcription factor, SBP-box
PfamPF031104.2E-24123196IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2632 aa     Download sequence    Send to blast
MASEEADLEL WDLDIAEPAA EAGHWNLTGY TWDPVHLTAT RKPAEAPGPQ AQMYGRTCAD  60
DSGVSQQPTA QQLQQQGSGC AVMDCEGGAL VVDGADGPCN IDHAALATAP VYSPQPGGNK  120
MACQVLGCGL SLAGMKGYFL RHRVCEEHSK APVLIIGGAP SRLCQQCSKF HHVNAFEGAK  180
RTCRVQLDRI RINKRARRTR KMNAAAAAAA AATGLDDGGG VMGVRMGMGM GSECPAPPAS  240
GLRSKRPADS SGSGEGSYTD SRKARHLGGP AGAGAMAAAA AAAAAAAAAA AAAFNAGGVR  300
IAGGAPVTLV TPLALAQALS GCAPGGAAAA AGVGSPETDP LLPESGGSGS DGSREHPRAS  360
VGLSGQTGWR YGEPQSSMQP MSPATAMAGG AAATALVAHS PASGMTGPDG GGGGGMHASL  420
STHALQQYGN NSNNNNPYGQ AHVGGMGQMD AGGPGSIAAA AAAAGLGHPA AGMPGAAAAA  480
QSAPRMFAAH QQMAAAAVAA AAAAAVAGQQ QRQQESGVGS HGGGGGQQDA TASAWSLQVG  540
GSGADGTGGL PAVPSANNLH PLLQQEMLLQ QQQQQQQQPK LAAAVAAAAA AWQPKPCSDP  600
IMRGSLREHC SRDLHSAALS DMALATGSGM GAGGATAGSH PSPHVQTLAA NVLAGSPQEM  660
LLIQQAMLKS SAPQGCVPSL AGPDSGSGGV DPALVAMLNG SAPPALPGMP QTLAGCAAIG  720
GAGGAGGRML TASGAVIATM PSASAASGGA RSANTLAGAL GNAAAANSNP ISRRDGDALA  780
SGGNNDSGRP ARMSLENDDA ILAPGDDALL GSLMDLLTTQ NADLGGVGGS NNTGGNGANG  840
THGGVMGASG GANGSLVGLS GLSGLGMGGS GMGGMGGMGG GGSGNAKAAA IAALTGGGSA  900
AANNNGGAAS NHHNHHNGGH TNHGSAMLLG GSNDLRLQSW GLSALGSGFS SGRGGQQLLL  960
QGVPGFSHGL SGGAGGGGSN TGSLAALAAG AGGLQGAMDL AAAAAAGGAA MSRAGSAAAG  1020
GAAGAPGGSA NAMAALSPPN LEALMALPPG SSASTVGLGS LGIGRTLLLE QGLGSLGGLS  1080
ALGGMSPLGG SNALVGSQLG SLSQLAGSHL GGLSQLGGSQ EQLLAGLGSM GSVGAGFAGA  1140
GQGSAAAAAA AAAAAAAGGD LLLQRQLLHA QAQQQQQQHV QQQQQIQLLQ QQQQALAQQQ  1200
QLLQLQQAQA AALAANATAA SAAPAVPAAG LLLSRLLDAD TKTHHLSSEL NGCLAEKQLL  1260
RRQLMLTLQS GQAPDADQVA AAAMAAAATG NAMASMTAGA PAGAAAVGPG AAAVAGLGSL  1320
AGLGVAPAVA LGAARASPAA QLQALMDARS AATAGVPAAV ATAATSPQMA AAAAPAAGTG  1380
GYAAPDLLTR VSLKIMNCLP DELPPDVRSR MQAFASQAPL DLVQGCLRPG CTEVVLDALH  1440
AGDERALVAE LLRQGDVEAA AAALLAALPS SLHCKDIYLQ AADQALYLRP GAPPKRASWA  1500
GVAMRRGGQR VAKPELLAAE APVLHMDHSA MDGSRYVRLR VFGRHLDGAG VTVLARMGGL  1560
ALAVTLTPVD VNGDGKSRAA AAPPSSVVLT EQEADSCPTS GRHAPAAAAA ATPTTSEATA  1620
PAPPPPQLEA SGVSLSAPPA SPSPPPAAST SPQPALPGTS SPSCTAASPA PTTSSAAAAA  1680
APYSLYDVEI EIPPAAPSQG LLILEPRAGV LLGSWAPVLL LEDAGAAAEA AAMLRGLDAD  1740
AARRLVVSLG LFVDHGERCA AVLEAEEAEA EVGCADDVEL EAEEAEEGGD EVGGDCEERQ  1800
GESMVGVQQQ GGVEAATPRA AGARATSSCA HSVAVPAARG ADGQPLAVAA AAVNAMDAAA  1860
EETMAGVAAA EAGAGSPGAA GRRDWHAVFG PSHERIVGMG RTLLAYSALR ACPGLLSYLG  1920
SQLVEMGQPL AALPAATYNG APLLACATLA GGGAVLRIAA EWAARGGAMP DWRAQVPGQP  1980
VGATLLHLAV SLPPPAAVAA LEVMWALALA GPAQPADADS FAAAWFSGQT AADAAAAALN  2040
GCVLLDSPAV LFGAVSRAAL AAANPATAAV ALAAATASET LDRLCIARLA SSYIRTHNYT  2100
SPLDHVDLPS MEANSSVGSG AGRRDAAAAA AQNMDATSSP RQRCSREQHA AGAAAAAALH  2160
DLHDCLLPDF DGLDEDEHRQ GAANAGDSAT GAVNSGSGER VRDLVTEDYA FAHRSSRQLM  2220
AASPGGGADD RSGHGSVGGV PAFLMSPNGV TPAAFSPTDV PSIATASPPR MRVVVAPKAL  2280
AQSVAVAAAG GAAGAAAAAA AAAAAGGSGS AWHASGADAS LVPPSNFTLA SSGVCASGSM  2340
PVFGSSTTAA GITGVYGGSL GLSSYGVMAG SMAGAAGMAA LKGCGGGGAA SSHAGASADG  2400
ATGMAAGAGH RGAPLPMEPL LNMCRPLPGS PASSSDPQQH VLSTDALAVL PNSRAGVPAL  2460
MQVPQQPAAP PQQPATDRPS ASAARPVPAA PAPVPAAAVM PASPPELWPG VVICGSAPAA  2520
PTGGLALAAD GDASAHGGSV VHSSDGRGFP APRRLHTLPA AASGHGGSLM DRAMSAAAAA  2580
EMEAAVQAAA AAGGGGRFPM RDLMKKFKSM FKRSPGTGGA GSESDTSNHR S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre16.g673250.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CVK40.0A0A2K3CVK4_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1256722
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-18squamosa promoter binding protein-like 9