PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre16.g672400.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 502aa    MW: 53671.1 Da    PI: 4.7038
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre16.g672400.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.3e-07424471248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                         g W+ eE e+lv+ v  +G ++W+   +  +  ++R  +q+k +w++++
  Cre16.g672400.t1.2 424 GFWSLEETERLVEWVDSHGARQWTMFVQL-NtdLHRDVEQVKMKWRNLK 471
                         67*********************994433.369*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.34418471IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-5419478IPR009057Homeodomain-like
SuperFamilySSF466893.81E-9424481IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MKMLEFRLKL GTGADWEALG PIPEPFPFSI DADCTTLAFK HYLSHKILNG VFEPGNFQLR  60
LQGCDKELED VADAGQPTTS THQPQLRRLA SQGVCNGSVL QLDVCATEEE LQRFLDAAEE  120
CGTANELGHV EEQQEAQTPP AAGVDPRQRH AAEGSAAAAG DGPTGRPSLG MMHTPAGTVG  180
TFLDDEDADY LQEDLEALVQ PAAQRAGEEE LDHLNVAADG EPFEAEDAED FEAHGRELRG  240
AGGVVGAPQQ QHPAFAAAAE GREQEGDDED WGDMGLRSAG TRTAGQPERR AAVATPARKQ  300
QQQQQRPRAN LQSAAKRARR EAPEEELDFV SGSADEGAQP AQQQQCTHGA AIVGGSTRGA  360
AAPARAAATG AATAAGAAAP RSQPPRQPAL ARSTGLPAAM QPAVDTGAFS AYGGGGGQQR  420
ASSGFWSLEE TERLVEWVDS HGARQWTMFV QLNTDLHRDV EQVKMKWRNL KNASKKRWTV  480
ARRVPPPDLR ARIDEIVRRD T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre16.g672400.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001695804.10.0predicted protein
TrEMBLA0A2K3CVN70.0A0A2K3CVN7_CHLRE; Uncharacterized protein
STRINGEDP011410.0(Chlamydomonas reinhardtii)