PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre16.g672300.t1.2 | ||||||||
Common Name | CHLREDRAFT_184386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | YABBY | ||||||||
Protein Properties | Length: 207aa MW: 22663.3 Da PI: 10.9468 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 23.5 | 1.6e-07 | 36 | 103 | 94 | 163 |
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ++++++ + ++ ++ ++p+v +P k r+Psayn f k q+++++nPd e s Wa + Cre16.g672300.t1.2 36 AKKATKPAKAEKAPKAEKAPKVEKP--KAMRAPSAYNLFYKAIFQQVRSENPDKKVTELGSKVRDKWASI 103 3444444566666677777888888..7899************************999999999999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47095 | 1.44E-13 | 49 | 123 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 1.9E-9 | 61 | 131 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 11.017 | 62 | 130 | IPR009071 | High mobility group box domain |
Pfam | PF00505 | 2.1E-13 | 64 | 127 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.03E-9 | 64 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.30.10 | 6.0E-12 | 64 | 121 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47095 | 2.23E-17 | 132 | 199 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 1.5E-11 | 135 | 198 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 14.048 | 136 | 204 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.6E-15 | 137 | 202 | IPR009071 | High mobility group box domain |
Pfam | PF00505 | 4.9E-15 | 138 | 195 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 2.27E-11 | 138 | 199 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MLRYAALRTV PRAIAPARRA MVIRSFSESN DAAPPAKKAT KPAKAEKAPK AEKAPKVEKP 60 KAMRAPSAYN LFYKAIFQQV RSENPDKKVT ELGSKVRDKW ASISALERAP YEAQAAARKK 120 EVDAKRAEVL AAKKAAARPV TAYIAFANAK RPEIKAQNPD KTMAQVASLL GSIWKGMSEE 180 QQKPYRDQAK AAMDAWKAKQ QAQQSA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Cre.7719 | 0.0 | nutrient deficiency |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre16.g672300.t1.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001695913.1 | 1e-141 | high mobility group protein | ||||
TrEMBL | A8J3F0 | 1e-140 | A8J3F0_CHLRE; High mobility group protein | ||||
STRING | EDP01250 | 1e-141 | (Chlamydomonas reinhardtii) |
Link Out ? help Back to Top | |
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Phytozome | Cre16.g672300.t1.2 |
Entrez Gene | 5721401 |
Publications ? help Back to Top | |||
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