PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre16.g667900.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family AP2
Protein Properties Length: 2148aa    MW: 218565 Da    PI: 7.1439
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre16.g667900.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-1210691132256
                 AP2    2 gykGVrwdkkrgrWvAeIrdpse.ng.......kr.krfslgkfgtaeeAakaaiaarkklege 56  
                           y+GV+ ++++g+W+A+++d s  ++        r k+++lg + t+ +Aa+a++ a++ ++ge
  Cre16.g667900.t1.1 1069 AYRGVTKHRWTGKWEAHLWDSSVaRKktspggrSRgKQVYLGGYLTELDAAEAYDMAALVYWGE 1132
                          69******************6667666788875337**********99***********99986 PP
2AP223.91e-0711771226255
                 AP2    2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                           y+GV+++    rW+A+I+     g +++  lg f  +  Aa+a++ a+++ +g
  Cre16.g667900.t1.1 1177 AYRGVTRHNLAERWEARIHL----GANQYLLLGEFTEETAAAAAYDYAALRRRG 1226
                          69******************....336**********88**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-1410681139No hitNo description
SuperFamilySSF541711.31E-1310681140IPR016177DNA-binding domain
PfamPF008476.4E-810691132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1410691140IPR001471AP2/ERF domain
PROSITE profilePS5103218.67610691139IPR001471AP2/ERF domain
SMARTSM003801.8E-2210691145IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-811761235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-911771235IPR001471AP2/ERF domain
SMARTSM003801.2E-711771241IPR001471AP2/ERF domain
PROSITE profilePS5103213.15611771235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2148 aa     Download sequence    Send to blast
MEPPASQGQP GRGSEGGAPR PLSPRSIMAP SVVPSMGLPP PMPLLPPPQS QQPQQSQLTL  60
PAHSEAATQQ DTQLASSAGG SQGAPATPFA TATGGGLHFT SLNAKPPQQQ QAQQQQVPPP  120
RSPPAYLNPP PLFQQPRSAH QQTAAPATPT ASATHQQQQY QQQQTMAAAA QAEAAAAGGA  180
DTRSLVVTVT AGGGEADGGQ QPMSPPSHHS HQHPHQPHQP HQHPNQHPHQ QHQQHQQHPH  240
PQYHFQQQPH AAAPAGTVTR RYSEPVWGTQ GPSFGPGGGG GGSAGGAGGS EGDASDPGFA  300
SWLIRFGGSG GGAAPSGVGG PEPVGPNNLD FAFNSGRQTP QLPPPPHHHQ HHQHYQPQPH  360
PQQQAQPYHP HQQHPYGAGG YGGGYSGQVY EQPAATRYAS LGSAGPAAAS GGGGGGNGGA  420
AAGVATGGDT AMDVDSMLVG GGGPAGGGGP GGGGGGGCQQ AEDMSGVSHP PQAHQQRYYG  480
TAAAGAGAGG GGGDASRGGS VSSTAAGGGA AAVAAAAAAA AAAPPPPANW LAESAAGVTQ  540
QPQTQTQHPY HDLPYPQHPQ HPQHAPSHGA LQHNHHTHQP HTHPFHGSAP PSPVHFLAVG  600
SPPPPPPPLG RGAAAAGGGG GSEDGRGPPG APTTFRGFAT PAAPPAAYAH SSDGGSGDAG  660
SGGGGPYRVF MPSNGQHAPE CPHHHAQHQH QHYHPHPYPH QHQMPHPPPP PHPHYQPPPY  720
PHGGVYEYTH HHHHHQPQHT APHYHQHHHQ HPPHQPHQPQ HQHQHQHHQH HQQQEQPNAL  780
VQYQPLQQGR ASYPGATIRT SNGGGGGGGG GGGVSELERP GSPNGSTQSA ASNLVGGGGG  840
GGSGGSGERQ RRPLAELHSD IHQHQPQHQQ HQHQQHQHQQ QQHNHQQQHQ QQHQHQQPRI  900
SRRASAPVPS GAVAAAAAAG AAARPPPGSR RRRRSGAGDY DGDPDFVPDR ARGGGGGGGG  960
GGAVSDAVVL YGGPGAGRAG YEYGYEEEYD EGEEDYEEEE DYEEQDDVND EDYNAEEDGY  1020
VPARDAAGGG GGRGGGGRRP RQPKGGAARA VPLPLPPPQT RVKKTGTSAY RGVTKHRWTG  1080
KWEAHLWDSS VARKKTSPGG RSRGKQVYLG GYLTELDAAE AYDMAALVYW GEAATLNFPK  1140
EHYDCRRAEL STLDKDGVVA LLRRRSTAAV GGRGASAYRG VTRHNLAERW EARIHLGANQ  1200
YLLLGEFTEE TAAAAAYDYA ALRRRGVHRA LTNFNPATYL DPDGTLISVD RLQPATREGL  1260
SLNSLQRLDE DLRRQEEQQQ QQQQQGRKAA AEVAANAEAA NAEAGQNGDG EGGGVGGAER  1320
MDAAADRDAD PDADPNPDPE EPNHLYEQVM KQLAEEGRQR QEAVVAAAAA AAAAGAAAAP  1380
PAAVPAAAPA AASGRRGGAA GGRRGRGGGR SGGAAAALQL PETAVADLGR RAPPLGMTIM  1440
TRAVSAPGEV VWTTAAGGVG AGDNGSGGGG GLEEPASPLP PRLRKHHKQD QQQQQQLLPG  1500
VAAFATPGPV RPVVTSTAIT FTGLTPDVVA AVTSGGSAGD GGSAGGGAGG GAGGGDAAAH  1560
APAGQLQAAA PPPPPLTRRG TRSTRSGSAA SASAAALEQL LLPHTPPPLF TVTTNSAGMN  1620
TSCGAVPGGG GAAAAAAAAA AAGGGGTAGL PAAPARPSSG MGPVVTTLNY LARATRSPST  1680
GSNANAAAPA AGGPASGPGG PGGPGSPSRA RSVQLASLPA AASAAAAPAA AAAPGPVFGM  1740
AAADDGAGSS ERSSNHLLAA GNSNESGGGG GGSGGGAAAG APSLLVAAQR RASYAGGGQT  1800
PQPPPQPQQL QPPPPPPQQQ QLQAWASAGE QGGGGVSGGG GGGSGAGGAG GRSMAAMTPE  1860
ATSWRWGGGG GGGGGAFPQQ VPLPLPPMPT PGAGTGASSQ QQQQQQQAHS AVVGAVAGHG  1920
YGYSQYHHHH HQQQQQQHQQ QQMSHMQPPP QHPLLQPQSP RGLQLLDEEY HLSLLRQNQQ  1980
QHQQQTQAQQ QHQHQQHQPA GSSDHQSQQE QQNQQQQELQ QLQWWPSGAV DPTRGSGGGG  2040
SEQQTVVAVG VQQHQHQHQH QQLQLPPMPP PQQQLLQYQH LQQHQQHQHQ HQHQPSAPQL  2100
QQQVSYAASQ GAPGSGLLLG EGATDTDIDM TEAGAGAGAG RPRLHSM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114001408GGRRGRGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre16.g667900.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CUG00.0A0A2K3CUG0_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-40AP2 family protein