PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre14.g621172.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 1119aa    MW: 117592 Da    PI: 10.0487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre14.g621172.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-094584142
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42
                        + +WT  E+ ++v++++ +G+  W++ ++++  gR + ++k+
  Cre14.g621172.t1.2 45 KRPWTLAEEVIFVRYHAAHGNQ-WARLSQHLS-GRDATEVKN 84
                        569*****************99.*********.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.3234094IPR017930Myb domain
SuperFamilySSF466891.09E-94191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-104292IPR009057Homeodomain-like
SMARTSM007176.4E-74492IPR001005SANT/Myb domain
PfamPF002497.2E-74584IPR001005SANT/Myb domain
CDDcd001674.37E-54784No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MDDRFRAPVG SSALVLTAAP RQSANDENVG FSLCGSANTT ASIRKRPWTL AEEVIFVRYH  60
AAHGNQWARL SQHLSGRDAT EVKNIFYSSQ RSKHVMARRV LRTYARAVQS AEDDPARRLE  120
GFRLALQVVG EVLQTAASDP SSVAVRTAAA AAAAAAAAAT VVSSPSEPLI ARSTPPLHQQ  180
QQQPQRPQRQ GSPTSSSGGD DDGASGAAGR GGAAVHTMAV AAEAAAAAVA ASEAAEQYRR  240
MLQQQRLQEL LLFGAQRQQS AGDEGLGEER EVQRQQAQQQ AQQQAQGQAQ QAQMEKGEMK  300
VEQSSSQQRQ NPSQEQEWQR RQLLSPPRPS PASAAAVAAT AGIDATAAGS SPAAAATLAA  360
PRDDEDAGMF YRSSNSSSSS GQLNNSVAAV AAAASVAMWP CGGGGKASST GGGDGGSRIE  420
AAVPCEGAAL RHQQQSQLLK PEPKSPQHLT LLLDNAEHQQ QLERLPPLAS QQHMQQSPRI  480
PASSNAAALT AEAQAAQQPA GAGRAQLLLA NGGGGDYVAA GAAATAYGCP NVEAAAGDRR  540
QQQHGAATAA HDRLLMLAEL AAAALGSLPR GSLPLLAEPN EQLHVTNEAK LACLQRLLPR  600
RPAYSDDSSS ATLAHRSGPR APWAAAAAAV SGATTAGQEA AGAAAPAAAA AAAAAAEPEE  660
PEGWQQQQDE LRRRRKLQQL QHLQRQVQVQ QQSAMRLQAP PPPAAVGGSP RSKGHDGTQP  720
YGGQQQELPA ATKTARAAAT ARTCRPDEAD IKTDPVAAAA AHAIDAVHAA AAAAVPGLVS  780
DPESGEPAAV VMLGPRELLL LRVYRMMKQR TSVHQQRQLA EPAAHSQQAT QPLLREPPQP  840
QPPKHQDIHP AGPQQRSPQP LQEDRQRRSA AAAAAAAAAG RVAAGVEAAA RLRLLRIREQ  900
QRREQQQQIQ EQPPPPPSEQ QRRAWHEWNA MQQIPPRPHM QPLHQQQQQQ QRTSSKRPAA  960
AIEPQPTAAE APKRPRLALL DLSRDTSTGA PSPTLQQQQQ PHPVSTHQQQ QLRRRNNPTQ  1020
LAAAATQNAA PPAGGFEQRQ QQQATPAPPS PQPQPGSPPA ARPFDIVDAA RKAGGGGGGG  1080
GRNQHLLGWA ARLLAMGLPE QLVAEMVYQV GAGGRMDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1670676LRRRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre14.g621172.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CY240.0A0A2K3CY24_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.13e-07myb domain protein 3r-4