PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre14.g621050.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | MYB | ||||||||
Protein Properties | Length: 1222aa MW: 123051 Da PI: 6.8305 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 11 | 55 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+WT+eEd l+ +++q G+++W++Ia+ ++ gR++k+c++rw++ Cre14.g621050.t1.1 11 GPWTAEEDAVLKSLIAQRGPRQWTRIAENIP-GRSGKSCRLRWLNQ 55 89*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 35.6 | 2.1e-11 | 63 | 104 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W ++Ed ++ a+ + ++ W Ia++++ gRt++++k+rw+ Cre14.g621050.t1.1 63 SPWEPQEDAVILWAHLHYRNR-WCEIAKHLP-GRTDNHIKNRWN 104 68*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.343 | 5 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-13 | 9 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.11E-26 | 10 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 11 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-14 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.60E-12 | 12 | 54 | No hit | No description |
PROSITE profile | PS51294 | 16.919 | 61 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-9 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-9 | 63 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-8 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1222 aa Download sequence Send to blast |
MRYKYDDQGQ GPWTAEEDAV LKSLIAQRGP RQWTRIAENI PGRSGKSCRL RWLNQLSPAL 60 KTSPWEPQED AVILWAHLHY RNRWCEIAKH LPGRTDNHIK NRWNCTLKKR LPSVLDLLRG 120 VGGGAGGGSS RCGRRKGGAA AAAAADGLQV KREADDGADG AGSGLGETQA EAEDGGPDGG 180 EADAAGGAQE EAGAAAVAAA KAAAQLPVTV ERIYTALLQA TGASGAGIYS RQHHAGGHRG 240 LGRAQPVLPP PSSLQPPQPH GTDGVEPVGA DGHLAASDDV DGGGGGGGGG GGQFGGVVGG 300 GGAAGGGGGA SGGEDGYGPE GCNNDGDVED RLSIADLFAL SAIPIPPARV AEAAAAAAAE 360 AAGLRFTSMG PACPSGQSPP RRVGRPRGSR RSSGSKRPRG EAPESDGGDD DQGGRRGNSE 420 GGGGNWNGGG GSRGHGGSGR SGGHDGEGGG CVSGGTDESD QASEAAAALE YLARAAAVAE 480 DVKPLSSQHL QLQPPQQQHI ALRRLSNEGA GGTSDDGAGT AGHDDMRRVG SGVGWVSGVS 540 AGGGCRDQRV LLVAANAAAV NDGIGGVSRG ADGAGGRWRQ QPLAGFALGL KEEDQKPSVA 600 QLLLAASGAC GGGGGGAHAG QQGVEAELLV RLQRALAAGA QARGLQASSE AGASAGSGQE 660 QHAHGQQGQG REGAGAALDG DSLAMTYGGA AGGGGAAAGG GAGGVRGLAE VLVQRLRRER 720 ELGLEAAAAA ADAGGGSGLA RLRGPGPGTG GTPLPLGQEA GVEARGGLLQ PTRNFAVSAA 780 AAAAEAGSRV ADMDASGGGG EPLQPQRGRK LHPHPHPHPH PHNQTGAPQA AAPPAPPPEL 840 AGSLFRLGRT LRAAIEEGND VAAMAVAAAL EQLGTLLAAP PHCQSQELDL TGGGVATGGW 900 HQPQHPNDVD ANADADMDDV YHEDGELLPL RMLGRAAGVD AATAGRAGLG VGLGVGATAA 960 GAFRGHSHRD ESVVYGISQG RGQRDAAALQ QGLQQRHHLP PQQQQQQQHQ HRQLVQLSHA 1020 LGKGGGGGGG AQAGVGRAST LLATAEWEPH QQQQEMRQQQ RQQQPQQQRV QLKQQQQQRE 1080 DLEDRHQQQQ QEQLLLHLRQ QAQQRHSAAW ASQPPGSLAP RDLQQLLMVQ QQQQLQQQHQ 1140 QRQQHGQQQQ SLRVARLMVP LASDGGGLGM AAGALSGAGP GAGTGTGTGT GTGAGAGGIG 1200 VSLSGLDPQV LRQLLLLHSR S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 7 | 111 | 4 | 108 | B-MYB |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 714 | 719 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Cre.19030 | 1e-159 | normal conditions |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre14.g621050.t1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3CXZ1 | 0.0 | A0A2K3CXZ1_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-33 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Cre14.g621050.t1.1 |