PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre14.g621050.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 1222aa    MW: 123051 Da    PI: 6.8305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre14.g621050.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151155247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        g+WT+eEd  l+ +++q G+++W++Ia+ ++ gR++k+c++rw++ 
  Cre14.g621050.t1.1 11 GPWTAEEDAVLKSLIAQRGPRQWTRIAENIP-GRSGKSCRLRWLNQ 55
                        89*****************************.***********996 PP

2Myb_DNA-binding35.62.1e-1163104245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +W ++Ed  ++ a+  + ++ W  Ia++++ gRt++++k+rw+
  Cre14.g621050.t1.1  63 SPWEPQEDAVILWAHLHYRNR-WCEIAKHLP-GRTDNHIKNRWN 104
                         68*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.343560IPR017930Myb domain
SMARTSM007172.9E-13958IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-2610103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-231163IPR009057Homeodomain-like
PfamPF002491.4E-141155IPR001005SANT/Myb domain
CDDcd001672.60E-121254No hitNo description
PROSITE profilePS5129416.91961111IPR017930Myb domain
SMARTSM007171.7E-961109IPR001005SANT/Myb domain
PfamPF002492.7E-963104IPR001005SANT/Myb domain
CDDcd001671.60E-864107No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1964111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1222 aa     Download sequence    Send to blast
MRYKYDDQGQ GPWTAEEDAV LKSLIAQRGP RQWTRIAENI PGRSGKSCRL RWLNQLSPAL  60
KTSPWEPQED AVILWAHLHY RNRWCEIAKH LPGRTDNHIK NRWNCTLKKR LPSVLDLLRG  120
VGGGAGGGSS RCGRRKGGAA AAAAADGLQV KREADDGADG AGSGLGETQA EAEDGGPDGG  180
EADAAGGAQE EAGAAAVAAA KAAAQLPVTV ERIYTALLQA TGASGAGIYS RQHHAGGHRG  240
LGRAQPVLPP PSSLQPPQPH GTDGVEPVGA DGHLAASDDV DGGGGGGGGG GGQFGGVVGG  300
GGAAGGGGGA SGGEDGYGPE GCNNDGDVED RLSIADLFAL SAIPIPPARV AEAAAAAAAE  360
AAGLRFTSMG PACPSGQSPP RRVGRPRGSR RSSGSKRPRG EAPESDGGDD DQGGRRGNSE  420
GGGGNWNGGG GSRGHGGSGR SGGHDGEGGG CVSGGTDESD QASEAAAALE YLARAAAVAE  480
DVKPLSSQHL QLQPPQQQHI ALRRLSNEGA GGTSDDGAGT AGHDDMRRVG SGVGWVSGVS  540
AGGGCRDQRV LLVAANAAAV NDGIGGVSRG ADGAGGRWRQ QPLAGFALGL KEEDQKPSVA  600
QLLLAASGAC GGGGGGAHAG QQGVEAELLV RLQRALAAGA QARGLQASSE AGASAGSGQE  660
QHAHGQQGQG REGAGAALDG DSLAMTYGGA AGGGGAAAGG GAGGVRGLAE VLVQRLRRER  720
ELGLEAAAAA ADAGGGSGLA RLRGPGPGTG GTPLPLGQEA GVEARGGLLQ PTRNFAVSAA  780
AAAAEAGSRV ADMDASGGGG EPLQPQRGRK LHPHPHPHPH PHNQTGAPQA AAPPAPPPEL  840
AGSLFRLGRT LRAAIEEGND VAAMAVAAAL EQLGTLLAAP PHCQSQELDL TGGGVATGGW  900
HQPQHPNDVD ANADADMDDV YHEDGELLPL RMLGRAAGVD AATAGRAGLG VGLGVGATAA  960
GAFRGHSHRD ESVVYGISQG RGQRDAAALQ QGLQQRHHLP PQQQQQQQHQ HRQLVQLSHA  1020
LGKGGGGGGG AQAGVGRAST LLATAEWEPH QQQQEMRQQQ RQQQPQQQRV QLKQQQQQRE  1080
DLEDRHQQQQ QEQLLLHLRQ QAQQRHSAAW ASQPPGSLAP RDLQQLLMVQ QQQQLQQQHQ  1140
QRQQHGQQQQ SLRVARLMVP LASDGGGLGM AAGALSGAGP GAGTGTGTGT GTGAGAGGIG  1200
VSLSGLDPQV LRQLLLLHSR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-3271114108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714719RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.190301e-159normal conditions
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre14.g621050.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CXZ10.0A0A2K3CXZ1_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-33myb domain protein 77