PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre14.g620500.t1.2
Common NameCHLREDRAFT_190235
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family ERF
Protein Properties Length: 344aa    MW: 37462.9 Da    PI: 6.3003
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre14.g620500.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-1981130255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         gy+GVr+++ +g+++AeIrd       + kr ++g+f taeeAa+a+++a+ +l+g
  Cre14.g620500.t1.2  81 GYRGVRRRP-WGSYAAEIRDaG-----CgKRRWIGTFKTAEEAARAYDEAAIALHG 130
                         8********.**********66.....67*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.93E-2880137No hitNo description
PROSITE profilePS5103221.07481138IPR001471AP2/ERF domain
PfamPF008471.6E-1281130IPR001471AP2/ERF domain
SMARTSM003805.2E-3281144IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2081139IPR016177DNA-binding domain
PRINTSPR003673.6E-98293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-2782138IPR001471AP2/ERF domain
PRINTSPR003673.6E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
METLWPAPYA LPLQSAAMAL SEQQLGQHID SGSEEDHIAV VAQVQTGKKR RSVSAEEDPD  60
YEDAAQGAQG ITHDGTSNKA GYRGVRRRPW GSYAAEIRDA GCGKRRWIGT FKTAEEAARA  120
YDEAAIALHG PRAKTNFTYP CQQQSAAAAP AAAHKAHKPH AAAAPQHHKP AHHSQQPAQP  180
RKQPLHPRQP YQQHQPPQLP THQEEEQYRR KSDDSDTSMT AALPLPLSLT GQLGLPPLTL  240
PGLEGLDLMA LQSNPALLAA LLAATRQHLP GLAGPDAQPA CLPEQQLSER VWVQEQPVQG  300
CEEEEDGLEE PEPPQVLRPE QLRSLQVLAE VAHLFGRRDF CMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1766137371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.32070.0normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre14.g620500.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001689851.10.0predicted protein
TrEMBLA8HP340.0A8HP34_CHLRE; Predicted protein
STRINGEDP095890.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-15ERF family protein
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]