PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre13.g572950.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | E2F/DP | ||||||||
Protein Properties | Length: 775aa MW: 78102.4 Da PI: 4.5855 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 27.2 | 6.6e-09 | 1 | 37 | 39 | 71 |
E2F_TDP 39 vknkrRRiYDilNVLealnliek....kekneirwkg 71 +k +rRR YD+lNV+ + +lie+ k k+ i w+g Cre13.g572950.t1.1 1 MKSIRRRCYDALNVMLSAGLIERvaggKGKKLIVWQG 37 6889**********************99*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02319 | 2.2E-6 | 1 | 37 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.7E-7 | 2 | 40 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-5 | 2 | 38 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01138 | 0.0078 | 46 | 287 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.3E-7 | 181 | 256 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.75E-7 | 181 | 235 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 775 aa Download sequence Send to blast |
MKSIRRRCYD ALNVMLSAGL IERVAGGKGK KLIVWQGSSA PRASLSDTDT AQKRQEVERK 60 RQQLQELERQ HAALQALLLA RAGAGTLNGA AEGAGEGAGA GSAACSNQDK GLDCAVGSTL 120 AHCVAAAAAG GPEGSAAAPA AAGTTAAAGH PNSAPVTGSA PSAGAGGGSC ALACVRPPPL 180 QIQLPFMILQ VRAGCDVAVR ASEDKRCVEL EMADGEAFHM HDDQSILQQL MLQRREQAQA 240 QAQAQAQEQA QAQEQAQEQA RVQAQAQVQA QVQAQAQAHV QAQAQEQAPQ ANRLPVLTPA 300 LVGPLSDWRQ SQQGQPQEQA QAAVVAAAAL GAAAAEPEIA AAVGHIQQGD QVFPQQQQQQ 360 LAGAAAAGGA AAARPAAVAA AMAAAVTAAA EPACDPQPFQ HLSQDWAAHM LRWRQESSSS 420 PSGFGAVGAS AAAEGATDTL PPLQQLPQSA AALQTAAPRL SESPMSATWP MQPAPATSGG 480 GSSSGSGTGS FDYWGFGLGV GLTNAGGVTG AQASQPQLQL QQQLQQQQLQ QPTATPHLHV 540 RVHPNAHIGL NLQQPVYQLP MLPQLAYPQM PQPQLLQPQP HTLQLLPQPL QVHAPQAPLQ 600 ELQQTWAGDG GCAGGAAATL ADDELWLLAS PLEDLCFSDG AAPGGGCYAE AGSRLSPLLP 660 ANANANAAAT SLEFDRAQAS CTGTAMGVAA GGGAWDGQSG TGSGSNSNSS GGAPGGTAAD 720 DWVATAAAAA GLLGDSGSGT AEWGGTAEWG GEGDGCDAYF ASPAEPSSFF AAAD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre13.g572950.t1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3CZT4 | 0.0 | A0A2K3CZT4_CHLRE; Uncharacterized protein |
Link Out ? help Back to Top | |
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Phytozome | Cre13.g572950.t1.1 |