PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre12.g538550.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family GATA
Protein Properties Length: 893aa    MW: 94401.8 Da    PI: 10.6474
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre12.g538550.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA231.1e-07176203433
                GATA   4 CgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                         Cg+ + p+WRr + ++  +Cn CG+yy ++
  Cre12.g538550.t1.2 176 CGVVEAPQWRRIE-KKL-VCNRCGMYYHRH 203
                         **********887.445.8********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0022167226IPR000679Zinc finger, GATA-type
CDDcd002023.59E-7170205No hitNo description
Gene3DG3DSA:3.30.50.102.3E-6170204IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.42E-5175215No hitNo description
PROSITE profilePS501148.51176203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MGALEALAAV CAEELQSNQR LALVDSTGVH SAVTGGGYLQ NYQHLVQVLA AHAAKQQQQT  60
AVGPGGLRLQ LPLQVQTQLQ HQPQQQRAPV ILHQQGRPTQ PVIVTRPPTL PVPAALPPAV  120
TFRPQTQQLQ LKRPADSAMS EARGKLESVD VRPLSPPSKP SSKPLIPGGP CENPYCGVVE  180
APQWRRIEKK LVCNRCGMYY HRHARFPDWS YFSGLANKNS TRHVVITHRG REGLQQNQPQ  240
QTQSQQVQIL SKPPLPAHMQ QTPSPLASPS LSPALSPNLL HVRDPAPVPQ TLAQAAGPEV  300
EQHEQAAAPG GMSDGNLSEL LRQAGASADL EAVQRLLTTP VRQLDIDTIR KLQALLGERV  360
RQQQHTQNRS PPMSPSREAM AAKPGQQEPP ASPQRGASPG SPRSDSTFAP PAHALDGAPA  420
VASGRGGAGG SAVAEARQVP SGPARSPLRT PPSSLLQADS VTMMQLGQQP ATGSALSPGG  480
SSLHGAANRA GADAWEACRT AAAEQRSPRV FTDAEVESVS AGPEMHPVKR MRVTPPPAAD  540
TWAVEPARRV QVTSQAGLQQ QVLLTHMLLQ QQQQEQDKAL RAAAMQQQQQ RQAAAARQLA  600
AAQRQAAVEE AGMLMAQQQQ QQQQQRRRAQ MAAQSATPAG AGAAGRSLME TIAAAAALQQ  660
QQHGPSRGGQ QEQQWQEHQQ QQQQERGLQG AMGGLLMRDL QQRAMLVHHH YHQQQQQHQH  720
QQAQHHQQQQ QQQGGGQRRL SGSGYSAAPQ LRLVALDGST AAAAAARGGP ARGGYDGGYL  780
QQQQQQQQRE QGRRSSQQGY FAGGNNGGMS QAVAGRGAGL SEAQAKELLS ALLARRAGGG  840
GGNNADFEAA ALAALAAAKG AGQMGGGGNN PGGVAALLPV LDLGKPSAAV AF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.115890.0normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre12.g538550.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3D5C60.0A0A2K3D5C6_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1233533