PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre12.g517350.t1.2
Common NameCHLREDRAFT_205637, LSD1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family LSD
Protein Properties Length: 178aa    MW: 17971.7 Da    PI: 8.2502
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre12.g517350.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.71.6e-122448125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggCr+lL+YP GA++VRC+ C ++
  Cre12.g517350.t1.2 24 CGGCRCLLMYPQGASNVRCSRCGHI 48
                        **********************997 PP
2zf-LSD147.13.8e-156488125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lLsYPrGA sV+C+lC++V
  Cre12.g517350.t1.2 64 CNGCRVLLSYPRGAQSVQCSLCHAV 88
                        ************************9 PP
3zf-LSD139.41e-1299123125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         C+gC ++L+YP GA sV+C++C+ V
  Cre12.g517350.t1.2  99 CNGCSIMLMYPVGAQSVKCSVCHYV 123
                         **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-112148IPR005735Zinc finger, LSD1-type
PfamPF069434.3E-112448IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.2E-156191IPR005735Zinc finger, LSD1-type
PfamPF069435.9E-136488IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-1196124IPR005735Zinc finger, LSD1-type
PfamPF069437.5E-1199123IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSVWMPPGGG SGSMAPPSQS HLVCGGCRCL LMYPQGASNV RCSRCGHITS APASAGADSS  60
QIVCNGCRVL LSYPRGAQSV QCSLCHAVTQ VPVYGHLVCN GCSIMLMYPV GAQSVKCSVC  120
HYVTPVTAAT AAAGGASGSV PAARPKTKQT VVVENPPSYD EKGNEVANIA VGVKADT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.106540.0nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre12.g517350.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001697083.11e-125zinc-finger protein Lsd1
TrEMBLA8J6A21e-123A8J6A2_CHLRE; Zinc-finger protein Lsd1
STRINGEDP007751e-124(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46131111
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-31LSD family protein
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]