PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre11.g481800.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family CPP
Protein Properties Length: 771aa    MW: 74999.7 Da    PI: 7.4697
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre11.g481800.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.61.2e-13104142342
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         +k+CnCk+s+Clk+YCeCfa+ ++C+  C+C +C+N++e+
  Cre11.g481800.t1.1 104 RKQCNCKNSRCLKLYCECFASSRYCEM-CNCMQCFNNREN 142
                         699***********************9.********9875 PP
2TCR51.91.5e-16185223240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         + kgCnCkks ClkkYCeCf+ag +Cs++CkC +C+N e
  Cre11.g481800.t1.1 185 HLKGCNCKKSFCLKKYCECFQAGIHCSDNCKCVECRNFE 223
                         789**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.9E-13102142IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.967103224IPR005172CRC domain
PfamPF036381.2E-9105139IPR005172CRC domain
SMARTSM011142.6E-17184225IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.3E-13187222IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MDADQNGQPP LVDAPTVAPP PGIRPMSSPQ GFSGQILGSL ADLPPGLRST TPQLGGMPGQ  60
TALPMFPPPG MPLPGASTLG RKPSGGKVPS ASSLGSAAAS GAGRKQCNCK NSRCLKLYCE  120
CFASSRYCEM CNCMQCFNNR ENEAVRQSAV EAIMERNPNA FKPKITGHET HTPVVVAAAG  180
ASGRHLKGCN CKKSFCLKKY CECFQAGIHC SDNCKCVECR NFEDGGGTGG KRVRYSSAPP  240
LAPTPPPASA AAFGLGPAPG LLPPFGGPLG GGFGGGLGGS AGVRSPTHGL GVGGASGLNL  300
LQQQGVNMGL LAPEVVGLLT GNTLPGTAAG LSSMLAAAAA AGGGGRPGSA TAAAAAAAAG  360
GLGGFGTLTL AGQMGGAGQG QQQQQQQQLG LPPLAGGSGG ALGPGLPPQS KVAQEVCSTV  420
CGMVKLSVIN ELCQLLWLVA DEEAAAAGAA PAANGAATDP QTAVKAEQGA GATDMDIDQQ  480
GQRAEAAAGA DAEPAPRGGE AGGSGGRDLY VRQERVVLEE FLSIVNKLGE TAAKKLATAQ  540
QQQQGQQQGA VAAGVTPGAA AAAAAAAGSG PFSATAAPQQ QQGQQAGAAL QYVVPGGMQP  600
LPGGPAGTPP AHFIPVLAPP PRPGQASTPT AAAGQAQSFI PTVAAPLVVP PVRPGSLSSS  660
GGTAAAPTGA TPPPPQAGPL HSGVPVILAP SRAPPASAGV GQAQLPQQVP LAAFGDQPQA  720
VAAYGALGAA GGGAGHGEVL GSETVQVSVV IGVGDGSASD TPPHLEGALT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-3210422411123Protein lin-54 homolog
5fd3_B1e-3210422411123Protein lin-54 homolog
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre11.g481800.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3D8T20.0A0A2K3D8T2_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.11e-46Tesmin/TSO1-like CXC domain-containing protein