PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre11.g467581.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | GATA | ||||||||
Protein Properties | Length: 1197aa MW: 112523 Da PI: 6.5264 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.7 | 8.7e-15 | 877 | 909 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkk 33 C nCgt++Tp WR+++ dg + LCnaCGly+ k+ Cre11.g467581.t1.1 877 CKNCGTKSTPFWRKDKnDGRP-LCNACGLYFSKN 909 ****************78888.*********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.8E-12 | 871 | 922 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 18.373 | 871 | 929 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.5E-18 | 872 | 923 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.28E-12 | 873 | 920 | No hit | No description |
CDD | cd00202 | 4.09E-16 | 876 | 923 | No hit | No description |
Pfam | PF00320 | 2.6E-11 | 877 | 909 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 877 | 902 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1197 aa Download sequence Send to blast |
MVLATHDGNG ATTTNDGSQR SQPETSQEDP ITTKVALNHD EQDDAKSGSG ANLGLPMPGA 60 GLNGGTMGGG GAGGGMSPAA AAAMMNSAMN PMAAAFSAMN MGGMGGANNP MAQAMQAAMA 120 GGMGGGMNPM AQMMQAMGGM GGMGGMGGMG GMGGMGQQQA AMAQAMQAMG TGGMGGMGGM 180 GGMGGMQYNP AAYMQQMMGP FAAMGMGGGM PGMMGAAAGA NGAAATSGAG GNANGTGASG 240 AGNGSNGGAA AAAGAAGSPG GAGAAAGGGG AGGGGGGGTP SGGSAGPNDV VTGMPLADIA 300 QQWQMAQQQQ AMMMYWWQMW MMSMMGYGGM GGMGPMAAAM GGGAGGGGGA DPASQMQAMM 360 ASMMGGGPMG GMGGMGNPAQ YQAMMQAMMM QMGAGMGGMG GMGGASNPMA AMMASMMGGG 420 GAAGANGAGA GAGGAAAGGP AAQWMQQAQA MQAAMAGAMG GGGANGMMGG MGPMAGMMNG 480 MGGMGAMPGM MGGMDPSAMA AAMGGASPAA AAAAQQQAQQ QQQQAAQAQA QAHAQAHQHA 540 HQQQQQQHAQ QHQQHQQHQQ QQPHQPQLPV QPQGHPGSTP ASATMGPMAV AMGFKGYHHH 600 QQQQHQHTPH HHDPSNGGHV APDSSPPHHM GGAGGAAADG GLASGSAGID PMDAAGGGGG 660 GGVLESPDDV DMVGVAASMG LNPHDMLGAG PMHGMLHGMH VPPGMGPMGP MGMLMLPANS 720 DEAYQEEDEG GSEVEDGDDS DAHQAFGSSQ HASGSHAQHQ QAAQHAQHNG YGQPHLQQHG 780 AAAAAGHYAG PQGVPQANPH QLAAAAAVLS AAAASAKRSL DQQGGGGGSN GFMARGGSSA 840 GLGGAGGLSG SNSNDSKRGR RATKEQKVGS QCAGKVCKNC GTKSTPFWRK DKNDGRPLCN 900 ACGLYFSKND APRPKILWKQ DEQAAAAARE GAGGASAPPS GGGSGSGAAP AAASANPLLN 960 DNSAAAAALV NAMTSRGLNP AAAISAIAAA AANANAKAGG TSPPGSSSGA PGAACAGAGG 1020 AGGVMGPAGA PGAVVAPGAA GAPPRPMQPN YAAMAQVAML AAAAAAKNGA AAAAAAAAAG 1080 GAPGAAGARP PPPLGNPVAA LAAAAAAMVR AGGGGIPGAT GAPGAAGLPA ALAAAAAVAQ 1140 SNQTAALLAA GAPGAGSPPP PLPPAGGSPV LIGADVGAVD AAVAPAALPE IKAEAD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre11.g467581.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3D7C3 | 0.0 | A0A2K3D7C3_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4198 | 11 | 11 |
Link Out ? help Back to Top | |
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Phytozome | Cre11.g467581.t1.1 |