PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre10.g460400.t2.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 457aa    MW: 46977.6 Da    PI: 8.8735
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre10.g460400.t2.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06200223427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         ++C++f   G+C +Gd C+F+H+p
  Cre10.g460400.t2.1 200 PPCHHFVNAGFCDRGDGCPFNHPP 223
                         89********************97 PP
2zf-CCCH24.35.6e-08241262425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                         + C +f+rtG C++G rC+ +H
  Cre10.g460400.t2.1 241 PACEHFLRTGRCSFGVRCRLHH 262
                         68****************9777 PP
3zf-CCCH22.81.6e-07424445526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C  +ar+G+C+ G+rC ++H+
  Cre10.g460400.t2.1 424 ECLSYARSGWCSLGPRCLRHHP 445
                         799******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.028196223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14196224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5200223IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4200223IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4237264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685237265IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5241262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765377405IPR000571Zinc finger, CCCH-type
SMARTSM003560.19377404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-5377405IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.812419447IPR000571Zinc finger, CCCH-type
SMARTSM003562421446IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5424445IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MLLPNTALKN LIKAHVWDHM TSSPVPSKRP RLGAPAAPAA AATAAVITTA TAAASLPTTP  60
AAMASPQAPA PAAAPAPAPA HQPSSRWSDM GPPPVVAATA ATSPAAAATG PTGKPPAPAP  120
PPAAAPSQKW GPPPTSAPLP WALQPQPQRQ PQRQQNSAVA GSPGGGAATP ASAGTAAAGG  180
GGLYVPCLHT LPAPVRPYAP PCHHFVNAGF CDRGDGCPFN HPPQAAVLLT EQGLPWRPNA  240
PACEHFLRTG RCSFGVRCRL HHEPGAAGAV NGGGGNGGGT PGAAAAGALA GTPRQRWGDR  300
SNGAAADTSP VIAGAQQQQR QAPPSTQLPS TQAQAQAPQP PSHQQPHPKP PGVGVTYTYD  360
ADAEEEGELH RYRFPQRLDA NPCRQYCNTG FCREGADCRY DHPEELGVWL NEDGYPHRPL  420
AQQECLSYAR SGWCSLGPRC LRHHPLRPRP AARERG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre10.g460400.t2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DBU80.0A0A2K3DBU8_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-13floral homeotic protein (HUA1)