PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre10.g453500.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 1300aa MW: 136323 Da PI: 6.2241

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre10.g453500.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.8	9.2e-08	158	197	9	48
RWP-RK 9 dlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 + s+ F ++++ A+ L+++ T K++ Rq+G+ WP+R Cre10.g453500.t1.2 158 EASQGFTSSLAATASALQLGSTSFKKKARQLGLCFWPYRA 197 56789**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.512	134	221	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1300 aa Download sequence Send to blast
MSSRASLRAA STGAYGSQQD GQQRAEGGAD EQRLVQEEGN NRPAVAAAAA KPAAGAAGAA 60 GGGDALDVDG AQDAWGAGAA REEEAEAEEG DREVAAAVRD GGGGGRSGGR GGRGRGRGGR 120 GRGRGAKPRG FPVPVQQTCV RRLAERAAIE LSVDVLREAS QGFTSSLAAT ASALQLGSTS 180 FKKKARQLGL CFWPYRAYQR LTTLTDSYKK EIEDLEKEAA TLPEPPPPPP PPVAAPPAAA 240 AAAAAAGLPP LPPSLLGLRL PPPLLPAGSA AVAGSTAQAA APVQAMQRFL LSLPSALAPT 300 NPAAVRAQEV RQLIAELKSR MAECEAWWAG FVAAPCRDAG FKLQKDPFFR KIQEWTRHTY 360 KKTHRDKVRS LCGEGGAAGG AAGGGAGGRK RRRGARAAGD DDDGEEEEEE EELDGQDDSS 420 DSDEGAAEEY DTTTLSEEEQ EQDEKEEEDE KEDDEAGELH EAESEDGEAG SRRRGRPPLK 480 RQRQPPPPPQ PPQPQGQQPP LQQRRRQQQQ PQPRRRPVIH SFPLPSASRR GGRATASPDA 540 AADGAGGDGG KGIVASTAAA AVEAPAPQAV AMAAAAAAAG GMGFPPPLQQ HLQVLAAAAA 600 EAPATAPASA LAAQQPQSQQ QDLQASHRRR QRIPITAAAA VTPSAAAPAA AAGTRAVASA 660 AAVAAAVAAG TRAALDIRRS LRAAAAAAAA SAEVPWAAAT APVTAEAEAV AAADEEAWQD 720 VRDVDMDDTE VAAAAATAAE VPPPPPPAVE PPLLSPHAAV EPPPPPSAAG VSPSVLAAPA 780 AAGDACTGGQ SSACGVPQVI SSLTSKRRHS REQAQEQQQQ AEKAEVERQR QQQQQQQHQQ 840 GQEQEQEQEQ EAVARPSYCS RGKRARSGSP AAGAATAAAA AGELPPPHPP QLQPRRSPLG 900 EMGAAGAAPQ VDEACAYGGG ATAVCDDTHD LQQQHLLQPS PPLQQLPSPQ QHQHQHQHRH 960 QHRQEREEER EGDRKEEQEE EQESSAAPLA AATPLLVPAA KPPPPAVTSM AITYTPLSSS 1020 LVHASTRAAQ SQPPQHLLPP PPLPRELQPP PAHCYQAPPP SPPPAAPAAA PDPPPPGPTP 1080 PPVAPPGAVF PLAPPRPSDP RLPQHLLGPP LHQHQPQPVE EQQHLQHQQQ PVAAPSAQTE 1140 SCLQPQPGQP QQQHQQSPHH QQSQNQHHQP PLHPYHQHHQ PPPPPQSQHQ HQPQQHQQPQ 1200 EPLPPQHPSL PPHQHQHPHQ HPPAASAAPR ELVQQLAVLR HRVSALEWEV RQRDGQLKEA 1260 AHAAEVAALK IKVAEQQAAL ERMEVERLRR ELQLLQEQL*

Sequence ? help Back to Top

Protein Sequence Length: 1300 aa Download sequence Send to blast

MSSRASLRAA STGAYGSQQD GQQRAEGGAD EQRLVQEEGN NRPAVAAAAA KPAAGAAGAA  60
GGGDALDVDG AQDAWGAGAA REEEAEAEEG DREVAAAVRD GGGGGRSGGR GGRGRGRGGR  120
GRGRGAKPRG FPVPVQQTCV RRLAERAAIE LSVDVLREAS QGFTSSLAAT ASALQLGSTS  180
FKKKARQLGL CFWPYRAYQR LTTLTDSYKK EIEDLEKEAA TLPEPPPPPP PPVAAPPAAA  240
AAAAAAGLPP LPPSLLGLRL PPPLLPAGSA AVAGSTAQAA APVQAMQRFL LSLPSALAPT  300
NPAAVRAQEV RQLIAELKSR MAECEAWWAG FVAAPCRDAG FKLQKDPFFR KIQEWTRHTY  360
KKTHRDKVRS LCGEGGAAGG AAGGGAGGRK RRRGARAAGD DDDGEEEEEE EELDGQDDSS  420
DSDEGAAEEY DTTTLSEEEQ EQDEKEEEDE KEDDEAGELH EAESEDGEAG SRRRGRPPLK  480
RQRQPPPPPQ PPQPQGQQPP LQQRRRQQQQ PQPRRRPVIH SFPLPSASRR GGRATASPDA  540
AADGAGGDGG KGIVASTAAA AVEAPAPQAV AMAAAAAAAG GMGFPPPLQQ HLQVLAAAAA  600
EAPATAPASA LAAQQPQSQQ QDLQASHRRR QRIPITAAAA VTPSAAAPAA AAGTRAVASA  660
AAVAAAVAAG TRAALDIRRS LRAAAAAAAA SAEVPWAAAT APVTAEAEAV AAADEEAWQD  720
VRDVDMDDTE VAAAAATAAE VPPPPPPAVE PPLLSPHAAV EPPPPPSAAG VSPSVLAAPA  780
AAGDACTGGQ SSACGVPQVI SSLTSKRRHS REQAQEQQQQ AEKAEVERQR QQQQQQQHQQ  840
GQEQEQEQEQ EAVARPSYCS RGKRARSGSP AAGAATAAAA AGELPPPHPP QLQPRRSPLG  900
EMGAAGAAPQ VDEACAYGGG ATAVCDDTHD LQQQHLLQPS PPLQQLPSPQ QHQHQHQHRH  960
QHRQEREEER EGDRKEEQEE EQESSAAPLA AATPLLVPAA KPPPPAVTSM AITYTPLSSS  1020
LVHASTRAAQ SQPPQHLLPP PPLPRELQPP PAHCYQAPPP SPPPAAPAAA PDPPPPGPTP  1080
PPVAPPGAVF PLAPPRPSDP RLPQHLLGPP LHQHQPQPVE EQQHLQHQQQ PVAAPSAQTE  1140
SCLQPQPGQP QQQHQQSPHH QQSQNQHHQP PLHPYHQHHQ PPPPPQSQHQ HQPQQHQQPQ  1200
EPLPPQHPSL PPHQHQHPHQ HPPAASAAPR ELVQQLAVLR HRVSALEWEV RQRDGQLKEA  1260
AHAAEVAALK IKVAEQQAAL ERMEVERLRR ELQLLQEQL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	124	RGGRGRGRG
2	387	393	GRKRRRG
3	388	392	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre10.g453500.t1.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DBC2	0.0	A0A2K3DBC2_CHLRE; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Cre10.g453500.t1.2