PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre10.g435450.t1.2 | ||||||||
Common Name | CHLREDRAFT_205871, CPL2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | GATA | ||||||||
Protein Properties | Length: 437aa MW: 44368.5 Da PI: 5.0322 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.9 | 1.2e-17 | 380 | 414 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC++t+Tp+WR gp+g++tLCnaCG++y+k + Cre10.g435450.t1.2 380 CRNCRATETPQWRCGPEGPRTLCNACGVRYKKGQT 414 ********************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.929 | 374 | 428 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.7E-13 | 374 | 431 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.7E-13 | 374 | 420 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-13 | 378 | 413 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.29E-12 | 379 | 411 | No hit | No description |
Pfam | PF00320 | 2.9E-15 | 380 | 414 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MATSGNGVSA LASAAPETWV PTMTCAPRPS DSCLPASAAE LREPVTSTIG RSTSPFDAER 60 PSCPHLPAMG HLTPHQAPAG LAPTWGESSF GIHGLAGGEC GGGSMWDCEP VAPAGPSAEG 120 LDALSFAFMQ SQQPHDQLIS RPGLSVTEHP CTLLRAPSGG YSLINTASIA AAAPLDAAAV 180 ILPQPAAAAV PAAAATPACS ESRTSPTPST DQQQPDATSA QTSSGATSSC GGSDMPENAA 240 AEVQQRAPEA PPAPLPLPQD AQASAVPSVA VEVVVEEEEE LRPVAVQQVG PPGTAALAAM 300 RASGRMALAA VPARVGQKRR AAATAAAVVL EAARDDEDDD EDYDEREEAG GAAGRGNTKR 360 MKRVGVPRTT TNKPKTGVTC RNCRATETPQ WRCGPEGPRT LCNACGVRYK KGQTLEYMAK 420 KAAAAAARGR NGGGDY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Cre.10268 | 0.0 | normal conditions| nutrient deficiency |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre10.g435450.t1.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001690411.1 | 0.0 | transcription factor-like protein | ||||
TrEMBL | A0A2K3DA58 | 0.0 | A0A2K3DA58_CHLRE; Uncharacterized protein | ||||
STRING | EDP05670 | 0.0 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP220 | 14 | 30 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 5e-12 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre10.g435450.t1.2 |
Entrez Gene | 5716063 |
Publications ? help Back to Top | |||
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