PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre10.g433350.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family SBP
Protein Properties Length: 3585aa    MW: 350816 Da    PI: 7.0122
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre10.g433350.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP79.83.9e-2593167174
                         --SSTT-.----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS
                 SBP   1 lCqvegC.eadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74 
                         +C v++C +adls+ k y+rr+++Ce+h k+ + +++g+  rfCqqC+rfh ++ef+ +krsCrr L +   +rr
  Cre10.g433350.t1.1  93 TCMVKDCpAADLSQGKAYYRRFRICEKHLKTLSLCIEGKPSRFCQQCGRFHVVEEFEGTKRSCRRALLTRFYKRR 167
                         59*****557*******************************************************9876666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-2588156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.60691169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.01E-2193170IPR004333Transcription factor, SBP-box
PfamPF031101.4E-2294167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 3585 aa     Download sequence    Send to blast
MGDEAAAGPG GDHQQHGWSV GDFAWDRRRL VALNVGGGGP SSGGPAAGGG PAAAGASGGA  60
ALAAGHDDDP EEQMDEGDER DGAATAGRQS GETCMVKDCP AADLSQGKAY YRRFRICEKH  120
LKTLSLCIEG KPSRFCQQCG RFHVVEEFEG TKRSCRRALL TRFYKRRNLP VPANALPAPQ  180
DPSPAAAKPP GAAAAEPRDT GAKSKSKVRS SSSALSGGGP DAADGDTSQQ QQQRRKRGRP  240
RAPPMDVRDL APADEAAAGE VMDAGVRGVR AGGAGGGGLG GGGFGGSGGG SGGGSGGGGL  300
LPHHRRSEGS NSPSSSMSGG SEVAAAGMGA AAAAAAPRRS AVEAAAAAGT SGSSRAHRGA  360
GQAALMPTGA AIPSSIDGAG VAAAAAVGVA SNLDPTMDLR AAAAAVTGGI AGIAGAAGMP  420
PYMRYRTTVL QQAQPQQQSM HQEQQQLLQQ QMQQQPGTLR LLQHQQQQAA TGGHSSSGRG  480
GGAVGAAGVM LLPAAAAGVA GGSPDAAASG AGLASGTAAA DMGVGLWSSG SSGRGGIAGG  540
DSSTSVAEQA ILLELLQHQR QQQQQQDASI LRQAGFGGGL GSGAFARGSV GTGPAGVQPE  600
RNGAANPLQR QQQLMTAAGA DPALSQHLFS QQLQQSSSAF PTMDEGGGAT RRLLLSASSS  660
HAASASAGGS DGSGGLRAAL LPGGDSSLSR LQRHIMLLHQ HPSDAAKSAA AAGAASGAAA  720
NSGSYSRWLT QQRQDANMDG VDAAARLLLQ ATAGQGSGGM ASAGGGGGGA GGHYTHKMPA  780
YQTWQDWGGG IGAAGSSGMR NATLLAAGAG TAMAGGGAGG GGGGSLGSAS DPLEEELLSI  840
AKESSLQLNM DQDFRHVPGG GAGPRALGLP HHHKQFLLGG GGAPDVGSGG RNMDISLPQY  900
HSLPQLLPQV QQLQQLQQQG GSGSRRPDIL STSADGGGGR LIVTIPPGAL AAAGAAAGDL  960
NFQVFTTGGG GGGGGGGNAG GSGGQPAATT DHADAAGGAT AAAAGGMDSS QQLDASMGIV  1020
PRGAAARGGE GLYPHHQLSH PLSQQLPQHQ RLLGLPLLQQ QQQQQQQQQQ AFGRHSAPAA  1080
GTAATGAGGS SSAAQLGSRY LLQSGRGAAA DALSAVPAGS STAGGTALGY RQGAMGGTNA  1140
LLQHINPLQQ MQQVLAAGGS GSSGNWQLQQ AAAAAVGLAG GGGGKGSGSL RDAAQSLLGQ  1200
GGARAAYSPP AGMLERLSIK LHNCRPDQLP PDLAERLVQL LASTDASVQQ GFVRPGCTNL  1260
IIDLLYGDWE RLLAGLLLSP PGAAGAAGGD ADDGGARSGV GAASASSPQA AASHLVRCLL  1320
GSYSCQSQAQ ESEPAGAASG GPSAAPSSLE AHAALEGRIH VQLGNQLLVI DGSHVQLRRR  1380
AVMVPAAVPP WVDGCGSGEG SSTASCPADG SRFVDRQRRR PAATTSSGPR WARSSSSDTA  1440
VSSAAGGGGR CTAWSGPELA GVAPMAVVAG QPFTLELAGR GLQLPGSCVH VRFRGGHLDA  1500
LPETGTNENA GDTTSCCSLT GAMGDNGGLP MTLLMSSSAA TSAAGVKGGS GGGAGACGGS  1560
GGGGFSLGAR SSATASTAAD APAAADSAGL SGTPPAAKGA APVLPQAPAA ADVLQQQQPQ  1620
HAPHSQLDSR LQLQPLLMGC RQPHDAAAAG GGGGGRSVAA AAEASCTFRP RQGPSAAAAA  1680
PPAAVASEGI PAAAPSAVPA SAASAAGAVS PHAVESPVGG VVIGAAAVAV SLPPAILPTA  1740
TGYGSAAATV RAAALPEGPA LMSKGGGSSC VRMAAGARQQ QVVGEGKVAS AHRALPIDAV  1800
AHDVAMGGAG TIATAGCVSY NEVDGETFSR PSNSGDGWLS LQHRGGRLGA AGELSRSGGG  1860
SQRSSSGAEA ASLQGSASAP PPLCGGKATA ALLPSKHSSL GLISRGRSSS ARELMRTATT  1920
GGGRCTGTAA AGGMQLPVSP TAAAPDGGAR GLLLLGEGEV PPLSASLLRP RAGLVGRMLA  1980
PHIHQAGGGG GGGGGGVPGV ARSMAALGVD DTMNDILQVG TLLAPSPRRG RRTFVAAGSA  2040
DGGGAVAAAV AGARVLMPHS SGGRGGGCEA SSQREWGSGD GLTAAESRGA GSATSLANPA  2100
DNDDGGSRGC FMPWPAAAAS IGGGSDYCRS LTGLPPTMAA AADVQTTAFA HAVALRRNTC  2160
DAAGGAGDRA TAAQLPAEQP PRQHPLTSYQ QWLLEQQAAA GGAVVLPETA ANGDGSTAAA  2220
GVISRTLVFA RAAGSRSSSA VAVAVASAAA ATAAGSPACS QTSVSPSCFS TCAEEQQPAQ  2280
LLPEYYSLQQ PAGNVHLQHQ HQSPDDEVLV LFVEPAEKPG LAMVEVESAR AAPSATPAAA  2340
VTHSGGPAGR SSSRGHNPRD GIAAAVAAAA RGSNASSNGS DGSSARGLQG AVAGGEMTAG  2400
VLSDWWPVVV VPEAAAQAAA ELNHMLAEQG EEWVRHVVVD LGLVLEALDP DSDAEPEPEP  2460
AELYSSYRTP ATAASGPEPS LPESRAAAAS GTVAEHGLKQ DTSPSSGGCI ASGWQQQQQQ  2520
QQQRHDTESP EHPAAAAVAA AVPTTAAVAA ADQVPAAGPA DSWCAGEPLP SLVVGGLREQ  2580
QLLLPAACPG LRTLDQVTDL ESLRAPLPAA AAAAAACRIS NKEAAAGSEG EVPLLFADDV  2640
AAATGSASTG RCALKVEGPT IIGGGGGGGD NAVSSGEEVV AADPQQQVQL SDPGVGTRKL  2700
GATVAARAAA ALPSSKSAIR PHQEQQQLEC LTLLQQQQTI EPASGQQQAA QRLLQPPAVS  2760
AQPSTSTTGA LLGGWPAGGC GGSERFEHSS SLPTSVLLGD LTATEAAAFM GFTAASTELK  2820
GVAGAISGGW PPAALLCPVT AGTNTSRRST AATAAGGTHA AAVLLGIATS SASAAASAAG  2880
GIADELTSAS GPAAAQLSAG LLAGSVTAVE ARQQQQQQQQ QPLKHGLLPC GATVAAAEAA  2940
AAAPAAAGSG GCSSDAATDP TVRLRQQRRQ QREQLRQRAD ALLAFFADRG YPHCAGLVLA  3000
YLLRRDGVNP QLADAVAGFA SPLVPRDWRG VAAAGTAEPA AAAAAEPTSP PSSAEQSTAS  3060
SLAQCAAVAG PGAKEQLRSR GERQEAQEGK EVDVLSGAFA RLCARLRLRA GGVGLLHHAV  3120
RSGSLQLVEW VLGASRAAGA PLDAMEPAGP AGVMPVHLAA LLPDGDASAS ILKSLMQHTS  3180
AAVASATVSA TAVALQASEQ QQEYQHAGSG HTQQASPQQR GTQPSAADEE QPEQQQQTHS  3240
LQQVPADAHM QSQQRQEQRV RLEQLLSVGR PPLRDSFLTA AAAARGTPTS SAGNSSNGSR  3300
RSGSGGRALC LRAMSMQQPP HVASGSAGAA TVARLGAELE RLTSAASPAA AASPPAKASG  3360
ADAVSSRGDS CATAPAAAAA AAAGRSAALL AAAMESASGG GGGRSRGARA AGSRGIRCSA  3420
AQQPAASVRP AAATPHLHAN AVDDTAVAAA ATRQQRTPAA GSPVTAAVAS SGVGLSRRVG  3480
GAEACDAPTR GGVDNNKDAA AAADQDGHAA TPAAAAAAAD SARGLRVGGR APAVRRLDCW  3540
LLPAVAVMVL GLLVTAAGGA GGLSQGTAAL TGLELLAAMA SMLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-1584167183squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114141419DRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre10.g433350.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DA030.0A0A2K3DA03_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.14e-17squamosa promoter binding protein-like 1