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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cre10.g433350.t1.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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| Family | SBP | ||||||||
| Protein Properties | Length: 3585aa MW: 350816 Da PI: 7.0122 | ||||||||
| Description | SBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SBP | 79.8 | 3.9e-25 | 93 | 167 | 1 | 74 |
--SSTT-.----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS
SBP 1 lCqvegC.eadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74
+C v++C +adls+ k y+rr+++Ce+h k+ + +++g+ rfCqqC+rfh ++ef+ +krsCrr L + +rr
Cre10.g433350.t1.1 93 TCMVKDCpAADLSQGKAYYRRFRICEKHLKTLSLCIEGKPSRFCQQCGRFHVVEEFEGTKRSCRRALLTRFYKRR 167
59*****557*******************************************************9876666555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.1100.10 | 1.7E-25 | 88 | 156 | IPR004333 | Transcription factor, SBP-box |
| PROSITE profile | PS51141 | 20.606 | 91 | 169 | IPR004333 | Transcription factor, SBP-box |
| SuperFamily | SSF103612 | 1.01E-21 | 93 | 170 | IPR004333 | Transcription factor, SBP-box |
| Pfam | PF03110 | 1.4E-22 | 94 | 167 | IPR004333 | Transcription factor, SBP-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 3585 aa Download sequence Send to blast |
MGDEAAAGPG GDHQQHGWSV GDFAWDRRRL VALNVGGGGP SSGGPAAGGG PAAAGASGGA 60 ALAAGHDDDP EEQMDEGDER DGAATAGRQS GETCMVKDCP AADLSQGKAY YRRFRICEKH 120 LKTLSLCIEG KPSRFCQQCG RFHVVEEFEG TKRSCRRALL TRFYKRRNLP VPANALPAPQ 180 DPSPAAAKPP GAAAAEPRDT GAKSKSKVRS SSSALSGGGP DAADGDTSQQ QQQRRKRGRP 240 RAPPMDVRDL APADEAAAGE VMDAGVRGVR AGGAGGGGLG GGGFGGSGGG SGGGSGGGGL 300 LPHHRRSEGS NSPSSSMSGG SEVAAAGMGA AAAAAAPRRS AVEAAAAAGT SGSSRAHRGA 360 GQAALMPTGA AIPSSIDGAG VAAAAAVGVA SNLDPTMDLR AAAAAVTGGI AGIAGAAGMP 420 PYMRYRTTVL QQAQPQQQSM HQEQQQLLQQ QMQQQPGTLR LLQHQQQQAA TGGHSSSGRG 480 GGAVGAAGVM LLPAAAAGVA GGSPDAAASG AGLASGTAAA DMGVGLWSSG SSGRGGIAGG 540 DSSTSVAEQA ILLELLQHQR QQQQQQDASI LRQAGFGGGL GSGAFARGSV GTGPAGVQPE 600 RNGAANPLQR QQQLMTAAGA DPALSQHLFS QQLQQSSSAF PTMDEGGGAT RRLLLSASSS 660 HAASASAGGS DGSGGLRAAL LPGGDSSLSR LQRHIMLLHQ HPSDAAKSAA AAGAASGAAA 720 NSGSYSRWLT QQRQDANMDG VDAAARLLLQ ATAGQGSGGM ASAGGGGGGA GGHYTHKMPA 780 YQTWQDWGGG IGAAGSSGMR NATLLAAGAG TAMAGGGAGG GGGGSLGSAS DPLEEELLSI 840 AKESSLQLNM DQDFRHVPGG GAGPRALGLP HHHKQFLLGG GGAPDVGSGG RNMDISLPQY 900 HSLPQLLPQV QQLQQLQQQG GSGSRRPDIL STSADGGGGR LIVTIPPGAL AAAGAAAGDL 960 NFQVFTTGGG GGGGGGGNAG GSGGQPAATT DHADAAGGAT AAAAGGMDSS QQLDASMGIV 1020 PRGAAARGGE GLYPHHQLSH PLSQQLPQHQ RLLGLPLLQQ QQQQQQQQQQ AFGRHSAPAA 1080 GTAATGAGGS SSAAQLGSRY LLQSGRGAAA DALSAVPAGS STAGGTALGY RQGAMGGTNA 1140 LLQHINPLQQ MQQVLAAGGS GSSGNWQLQQ AAAAAVGLAG GGGGKGSGSL RDAAQSLLGQ 1200 GGARAAYSPP AGMLERLSIK LHNCRPDQLP PDLAERLVQL LASTDASVQQ GFVRPGCTNL 1260 IIDLLYGDWE RLLAGLLLSP PGAAGAAGGD ADDGGARSGV GAASASSPQA AASHLVRCLL 1320 GSYSCQSQAQ ESEPAGAASG GPSAAPSSLE AHAALEGRIH VQLGNQLLVI DGSHVQLRRR 1380 AVMVPAAVPP WVDGCGSGEG SSTASCPADG SRFVDRQRRR PAATTSSGPR WARSSSSDTA 1440 VSSAAGGGGR CTAWSGPELA GVAPMAVVAG QPFTLELAGR GLQLPGSCVH VRFRGGHLDA 1500 LPETGTNENA GDTTSCCSLT GAMGDNGGLP MTLLMSSSAA TSAAGVKGGS GGGAGACGGS 1560 GGGGFSLGAR SSATASTAAD APAAADSAGL SGTPPAAKGA APVLPQAPAA ADVLQQQQPQ 1620 HAPHSQLDSR LQLQPLLMGC RQPHDAAAAG GGGGGRSVAA AAEASCTFRP RQGPSAAAAA 1680 PPAAVASEGI PAAAPSAVPA SAASAAGAVS PHAVESPVGG VVIGAAAVAV SLPPAILPTA 1740 TGYGSAAATV RAAALPEGPA LMSKGGGSSC VRMAAGARQQ QVVGEGKVAS AHRALPIDAV 1800 AHDVAMGGAG TIATAGCVSY NEVDGETFSR PSNSGDGWLS LQHRGGRLGA AGELSRSGGG 1860 SQRSSSGAEA ASLQGSASAP PPLCGGKATA ALLPSKHSSL GLISRGRSSS ARELMRTATT 1920 GGGRCTGTAA AGGMQLPVSP TAAAPDGGAR GLLLLGEGEV PPLSASLLRP RAGLVGRMLA 1980 PHIHQAGGGG GGGGGGVPGV ARSMAALGVD DTMNDILQVG TLLAPSPRRG RRTFVAAGSA 2040 DGGGAVAAAV AGARVLMPHS SGGRGGGCEA SSQREWGSGD GLTAAESRGA GSATSLANPA 2100 DNDDGGSRGC FMPWPAAAAS IGGGSDYCRS LTGLPPTMAA AADVQTTAFA HAVALRRNTC 2160 DAAGGAGDRA TAAQLPAEQP PRQHPLTSYQ QWLLEQQAAA GGAVVLPETA ANGDGSTAAA 2220 GVISRTLVFA RAAGSRSSSA VAVAVASAAA ATAAGSPACS QTSVSPSCFS TCAEEQQPAQ 2280 LLPEYYSLQQ PAGNVHLQHQ HQSPDDEVLV LFVEPAEKPG LAMVEVESAR AAPSATPAAA 2340 VTHSGGPAGR SSSRGHNPRD GIAAAVAAAA RGSNASSNGS DGSSARGLQG AVAGGEMTAG 2400 VLSDWWPVVV VPEAAAQAAA ELNHMLAEQG EEWVRHVVVD LGLVLEALDP DSDAEPEPEP 2460 AELYSSYRTP ATAASGPEPS LPESRAAAAS GTVAEHGLKQ DTSPSSGGCI ASGWQQQQQQ 2520 QQQRHDTESP EHPAAAAVAA AVPTTAAVAA ADQVPAAGPA DSWCAGEPLP SLVVGGLREQ 2580 QLLLPAACPG LRTLDQVTDL ESLRAPLPAA AAAAAACRIS NKEAAAGSEG EVPLLFADDV 2640 AAATGSASTG RCALKVEGPT IIGGGGGGGD NAVSSGEEVV AADPQQQVQL SDPGVGTRKL 2700 GATVAARAAA ALPSSKSAIR PHQEQQQLEC LTLLQQQQTI EPASGQQQAA QRLLQPPAVS 2760 AQPSTSTTGA LLGGWPAGGC GGSERFEHSS SLPTSVLLGD LTATEAAAFM GFTAASTELK 2820 GVAGAISGGW PPAALLCPVT AGTNTSRRST AATAAGGTHA AAVLLGIATS SASAAASAAG 2880 GIADELTSAS GPAAAQLSAG LLAGSVTAVE ARQQQQQQQQ QPLKHGLLPC GATVAAAEAA 2940 AAAPAAAGSG GCSSDAATDP TVRLRQQRRQ QREQLRQRAD ALLAFFADRG YPHCAGLVLA 3000 YLLRRDGVNP QLADAVAGFA SPLVPRDWRG VAAAGTAEPA AAAAAEPTSP PSSAEQSTAS 3060 SLAQCAAVAG PGAKEQLRSR GERQEAQEGK EVDVLSGAFA RLCARLRLRA GGVGLLHHAV 3120 RSGSLQLVEW VLGASRAAGA PLDAMEPAGP AGVMPVHLAA LLPDGDASAS ILKSLMQHTS 3180 AAVASATVSA TAVALQASEQ QQEYQHAGSG HTQQASPQQR GTQPSAADEE QPEQQQQTHS 3240 LQQVPADAHM QSQQRQEQRV RLEQLLSVGR PPLRDSFLTA AAAARGTPTS SAGNSSNGSR 3300 RSGSGGRALC LRAMSMQQPP HVASGSAGAA TVARLGAELE RLTSAASPAA AASPPAKASG 3360 ADAVSSRGDS CATAPAAAAA AAAGRSAALL AAAMESASGG GGGRSRGARA AGSRGIRCSA 3420 AQQPAASVRP AAATPHLHAN AVDDTAVAAA ATRQQRTPAA GSPVTAAVAS SGVGLSRRVG 3480 GAEACDAPTR GGVDNNKDAA AAADQDGHAA TPAAAAAAAD SARGLRVGGR APAVRRLDCW 3540 LLPAVAVMVL GLLVTAAGGA GGLSQGTAAL TGLELLAAMA SMLA* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ul4_A | 3e-15 | 84 | 167 | 1 | 83 | squamosa promoter binding protein-like 4 |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 1414 | 1419 | DRQRRR |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Cre10.g433350.t1.1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A2K3DA03 | 0.0 | A0A2K3DA03_CHLRE; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Chlorophytae | OGCP20 | 12 | 101 | Representative plant | OGRP97 | 17 | 230 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G47070.1 | 4e-17 | squamosa promoter binding protein-like 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Cre10.g433350.t1.1 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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