PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre10.g430750.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 324aa    MW: 33447.8 Da    PI: 10.0768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre10.g430750.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-13120164347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ + +++G+g+W++Iar +   Rt+ q+ s+ qky
  Cre10.g430750.t1.1 120 PWTEEEHRLFLLGLAKFGKGDWRSIARNFVISRTPTQVASHAQKY 164
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0191970IPR001005SANT/Myb domain
SuperFamilySSF466892.08E-62174IPR009057Homeodomain-like
PROSITE profilePS500904.5652368IPR017877Myb-like domain
CDDcd001672.70E-52363No hitNo description
Gene3DG3DSA:1.10.10.603.9E-43567IPR009057Homeodomain-like
PROSITE profilePS5129418.8113169IPR017930Myb domain
SuperFamilySSF466892.21E-16115170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-12117163IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-17117167IPR006447Myb domain, plants
SMARTSM007172.4E-12117167IPR001005SANT/Myb domain
PfamPF002496.5E-12120164IPR001005SANT/Myb domain
CDDcd001671.16E-10120165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAASFSISGD FACGQSTGHA TFWRLEENKV FEVALARHYA DVDRFERIAS YLPNKTPNDI  60
QKRLRDLEDD LRRIDEGCNE GASAQSAPAA TPARSEDSAP NAKRPKTDVP ANGDRRKGVP  120
WTEEEHRLFL LGLAKFGKGD WRSIARNFVI SRTPTQVASH AQKYFIRLNS MNKKDKRRAS  180
IHDITSPTLP ASVANPAPTT GLAPAAASGK ATSSLVQGAT SSATTATSQP MAAAAAAAAA  240
AFPAAAHVAA AAAAAAAAAT STTSVFAQLA MHGLAMQPVM QQAAAAAAAA GMMPQLNAAA  300
AAAAAAGMPA PVLPNAAQYM VQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre10.g430750.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001702508.11e-106predicted protein
RefseqXP_002954068.11e-109hypothetical protein VOLCADRAFT_106244
TrEMBLA0A2K3D9V00.0A0A2K3D9V0_CHLRE; Uncharacterized protein
STRINGEDP062871e-105(Chlamydomonas reinhardtii)
STRINGXP_002954068.11e-109(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-33MYB family protein