PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre10.g421550.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

SBP

Protein Properties

Length: 1756aa MW: 173834 Da PI: 7.1174

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre10.g421550.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	79.2	6.1e-25	2	65	12	75
TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 12 seakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 + + y+rr+ vCe+h +a +v ++g++qrfCqqC++f el +fD +krsCr++Lakh +rrr Cre10.g421550.t1.1 2 TAERPYYRRYSVCEAHIRALQVQHAGKTQRFCQQCGKFQELVDFDGDKRSCRTQLAKHSARRRL 65 56789*********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	21.008	1	66	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.5E-19	3	53	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-23	3	65	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-20	3	66	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1756 aa Download sequence Send to blast
MTAERPYYRR YSVCEAHIRA LQVQHAGKTQ RFCQQCGKFQ ELVDFDGDKR SCRTQLAKHS 60 ARRRLKLAAR RQQREQERQQ RLRQQDQGGG GSAAGACGGG DGSDAADEDD EGTEHHSEDE 120 HRADGGSTAG AAAASGAAAT AGRRGDESDD GSMDEDHGGL ASYDGAAARG RRHKASARDK 180 AAAAAAPAAA AAAAAAAAAA AAAAAAEVAE AGMRRAGARV AAGRNRSSKS RRRAEPPSTA 240 RTSSAEGKGD SKPAAEGGAS GMSAAAAATT APELRPARQG TRNRQARAAA LAAVAAMAKV 300 GQSSSSSSGG SSSDDADSAA EEEQQQQPSA TRRRVAAAVR SPARAMAPQA PQAPPPPSAA 360 TAAAAIPPMS IKRELADAAE ESYAAENAQG GLRSGSAGAA SPDAADEPAA APRLMTAGLA 420 IAAGTEVAAG SQPQQHVAAS AAAGQQPAQD RGGGAAAAAA VDTSAGSADA AADAAAGPAR 480 DAQQQQAHGG HGAAVVAVQE EPQQQPQSRF GPDVEREDGG GGGGDEMEVD GAAGATAAGA 540 GEGAGGKGED ASRKVQGGAS PFHSQQQQQQ QQQQQQQQQL REVRTAAASS GGRGGGVAGS 600 GGGGMSEHDV RLRLLGRLSS GAGTAPAATS SHPHPAPGLH LQPAQTTPML AAPGSAAAAA 660 PEATRSLADI GAAVRKRAAE QLRRYQQQER QQPLKASEQL QQQQQFNSAP GFGRGSRTSY 720 EAASVAGGSM SCGAVMGSAA TSGALYSALP DDLQLDLEIN SMLVELAAEQ VLMGQQRQQQ 780 RLRQMQQERL LPLLQQPSAH QPLSSGASDM EVSQTLSMEP AVGNITPSPA AAIALALRGA 840 GSSASGADAV GGLPATAVAA LSARLPTLPT SLIASPPASH QRLQTQLQAH GITLHLGALA 900 SPPPAAAAGG AGDASGASGG GGGTSGGSAR DARQQLQQQL GSAGAALMRQ TPRDAPAHTG 960 NASSPHGTGG SFAGQGCSAS ASIMAAASGR IIMPVAAGGL SSAGESSGYA QLMGSNLTSG 1020 PLLATKPVGD MSSAPAGFVR DARMSGLADI SAFTGSAVGA VGGGVGHPPR WGSAGDAVPV 1080 EAATAIPGMG RSGGGVDGFR AHTSTAGGAG GGGGGGGGGG GGGGGGGGGG GGHGLVPERL 1140 DDWRSLAASG AMAPSSLGGG GISNSLGASM GQRPASDGAA VFPLSLMRGG SSSGGSLTAL 1200 GSAPGGARRG GSGLSAGGSG ATAGGGGGGV LGLAGGRPGT RVELLQLDAV GATAAARQPA 1260 AEAGAGFGSM ILCELGATGG GDEGGGSGSF AGLTAYRQAA GGSSGGLLGS GARTSWLSGG 1320 VLAMDTDDGE GVPGGRAVAG ATDTRRGSGY GTDGVGSGAA GRMALQLQQQ LEQYGQQHGL 1380 PQDGAAPVGL RMQSQPQPQM QMQMLQRQAL PTPESSAAPS SVAPAAGSVP PFNSDPGTSN 1440 NIRRQMQLQL QLHQLAQQAQ HDQAVQQRAM QVQQAQQAQR RQAQLQQMQL RQAWQMQQQQ 1500 AQQQQAQLAQ QAAAQQPMPW ELEAALVQRF SIKMYGCSPE DLMPDAREQL EAWLRSQGLH 1560 VLQASARSGC VHIVADVVRM PPQQLAPAAD TAAEAAMAGR GPPGEPHGDA VGAGRSSSEG 1620 LYELLGGLVL QPGMAGSSSQ WQGDGGGCSS DGTSAGGDQR ISSRSGRAVL GLLQGLLGPR 1680 LGQKDTTTGS GSATHARPAG ADYEQQVAAG RVELQLGSQV IELTLHQLLQ AAAEVAKRPA 1740 GGPPLQQMQQ QRGCE*

Sequence ? help Back to Top

Protein Sequence Length: 1756 aa Download sequence Send to blast

MTAERPYYRR YSVCEAHIRA LQVQHAGKTQ RFCQQCGKFQ ELVDFDGDKR SCRTQLAKHS  60
ARRRLKLAAR RQQREQERQQ RLRQQDQGGG GSAAGACGGG DGSDAADEDD EGTEHHSEDE  120
HRADGGSTAG AAAASGAAAT AGRRGDESDD GSMDEDHGGL ASYDGAAARG RRHKASARDK  180
AAAAAAPAAA AAAAAAAAAA AAAAAAEVAE AGMRRAGARV AAGRNRSSKS RRRAEPPSTA  240
RTSSAEGKGD SKPAAEGGAS GMSAAAAATT APELRPARQG TRNRQARAAA LAAVAAMAKV  300
GQSSSSSSGG SSSDDADSAA EEEQQQQPSA TRRRVAAAVR SPARAMAPQA PQAPPPPSAA  360
TAAAAIPPMS IKRELADAAE ESYAAENAQG GLRSGSAGAA SPDAADEPAA APRLMTAGLA  420
IAAGTEVAAG SQPQQHVAAS AAAGQQPAQD RGGGAAAAAA VDTSAGSADA AADAAAGPAR  480
DAQQQQAHGG HGAAVVAVQE EPQQQPQSRF GPDVEREDGG GGGGDEMEVD GAAGATAAGA  540
GEGAGGKGED ASRKVQGGAS PFHSQQQQQQ QQQQQQQQQL REVRTAAASS GGRGGGVAGS  600
GGGGMSEHDV RLRLLGRLSS GAGTAPAATS SHPHPAPGLH LQPAQTTPML AAPGSAAAAA  660
PEATRSLADI GAAVRKRAAE QLRRYQQQER QQPLKASEQL QQQQQFNSAP GFGRGSRTSY  720
EAASVAGGSM SCGAVMGSAA TSGALYSALP DDLQLDLEIN SMLVELAAEQ VLMGQQRQQQ  780
RLRQMQQERL LPLLQQPSAH QPLSSGASDM EVSQTLSMEP AVGNITPSPA AAIALALRGA  840
GSSASGADAV GGLPATAVAA LSARLPTLPT SLIASPPASH QRLQTQLQAH GITLHLGALA  900
SPPPAAAAGG AGDASGASGG GGGTSGGSAR DARQQLQQQL GSAGAALMRQ TPRDAPAHTG  960
NASSPHGTGG SFAGQGCSAS ASIMAAASGR IIMPVAAGGL SSAGESSGYA QLMGSNLTSG  1020
PLLATKPVGD MSSAPAGFVR DARMSGLADI SAFTGSAVGA VGGGVGHPPR WGSAGDAVPV  1080
EAATAIPGMG RSGGGVDGFR AHTSTAGGAG GGGGGGGGGG GGGGGGGGGG GGHGLVPERL  1140
DDWRSLAASG AMAPSSLGGG GISNSLGASM GQRPASDGAA VFPLSLMRGG SSSGGSLTAL  1200
GSAPGGARRG GSGLSAGGSG ATAGGGGGGV LGLAGGRPGT RVELLQLDAV GATAAARQPA  1260
AEAGAGFGSM ILCELGATGG GDEGGGSGSF AGLTAYRQAA GGSSGGLLGS GARTSWLSGG  1320
VLAMDTDDGE GVPGGRAVAG ATDTRRGSGY GTDGVGSGAA GRMALQLQQQ LEQYGQQHGL  1380
PQDGAAPVGL RMQSQPQPQM QMQMLQRQAL PTPESSAAPS SVAPAAGSVP PFNSDPGTSN  1440
NIRRQMQLQL QLHQLAQQAQ HDQAVQQRAM QVQQAQQAQR RQAQLQQMQL RQAWQMQQQQ  1500
AQQQQAQLAQ QAAAQQPMPW ELEAALVQRF SIKMYGCSPE DLMPDAREQL EAWLRSQGLH  1560
VLQASARSGC VHIVADVVRM PPQQLAPAAD TAAEAAMAGR GPPGEPHGDA VGAGRSSSEG  1620
LYELLGGLVL QPGMAGSSSQ WQGDGGGCSS DGTSAGGDQR ISSRSGRAVL GLLQGLLGPR  1680
LGQKDTTTGS GSATHARPAG ADYEQQVAAG RVELQLGSQV IELTLHQLLQ AAAEVAKRPA  1740
GGPPLQQMQQ QRGCE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-13	1	64	20	83	squamosa promoter binding protein-like 4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre10.g421550.t1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3D983	0.0	A0A2K3D983_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101
Representative plant	OGRP4828	13	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	1e-14	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Phytozome	Cre10.g421550.t1.1