PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre10.g421021.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 1746aa MW: 173691 Da PI: 7.2269

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre10.g421021.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	8	50	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+ E + l a++ G++ W++Ia+++ +Rt+ ++k+ ++ Cre10.g421021.t1.2 8 RRAWTACEYQSLCVAHAHAGNK-WALIAKHFR-TRTDADVKNIFY 50 679*****************.*****.******9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.861	3	57	IPR017930	Myb domain
SuperFamily	SSF46689	3.33E-9	6	55	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-10	7	54	IPR009057	Homeodomain-like
SMART	SM00717	0.0013	7	55	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-6	8	50	IPR001005	SANT/Myb domain
CDD	cd00167	0.00462	10	53	No hit	No description
Gene3D	G3DSA:1.20.1000.10	1.1E-9	614	692	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1746 aa Download sequence Send to blast
MGREGPSRRA WTACEYQSLC VAHAHAGNKW ALIAKHFRTR TDADVKNIFY STLRSVKPST 60 ENLALRVYAQ MVGPTCGDPE LRMRALEAAK AAVEAAAVHG LPDGSSASAA DGAAEGIGEG 120 AAGPSGSAAA PAGQQQLQPA VAEAGGEGAG GAGGSDRDGG SDSGGEDGGG EGEGAGEDGD 180 GRAGGGGGGA VANPFKWSIL RNVARLRFFK SAGKGKNKKR GAPGGGAGRQ QRVTSGEGEE 240 AQAAAGGIGH GDAAAAAATG AGSTAVPGND HRSAAATVGL TAAAGADHGA AAAAAAAVPR 300 LPPTAAEQQA AAAVNEPRPI RSRSQPLWYN PAGAPIGVGG GANNGGGGAG YATQSGSGSG 360 SKRAATANGD ATMELRRRRR RSGGSTSSRG SSGGDKDGGV EDGAAAAAEG SGGGPGGHQL 420 GGRHQHPSSY HRGTTAPVLL LLSGGAAASP HAAGGASGGG LSSSALYSGS DNNAQQGPLL 480 SYFTMDEDTD FDFEEGEGEA EVFDTRSGEL GGLGSSGGGA AAGGFGGGGT NDGRGSGNGA 540 RGGHNCSAAE VRWSLAERAQ AATGAAAAAA AAAVVAAAGA GVGAAASGAA AMLAPAFPAS 600 SPRRVHLHAC TPRRQQEQQL RLEEQQRQQQ QEQQEQQLMQ QEHHRQQQQM QQQHQQQNLA 660 QQQQHQQQQQ QLQELQLHQQ LVLQQHQQAQ AQQRHAHRSH PLHSQRPPFG GMTPLAAHAA 720 SPCTSSMAIN GIAASSSSGM PAFGAHAHAG CAADAPAVSQ PLPRLLPTNP FSVSAETLAP 780 RAVAVAAPGS AAAAQSLTPS PLHPSAAPQP SPAFTNPFLL QQHGCPPVSP PLSSSSAAFP 840 APPLGVAGNG AQMQQAPPPQ QQQPSWQAAA PASHQHHQHQ QPASGTGAAE PHFDDDDFLP 900 DVPSFRAMAE DQAAAAAAAA AAEAGAGGIS GLAAAVAGGG SSGARAAGAQ QQTHSELMLA 960 GTAFGGFAPA TATGHRTSTS APVPNAIARD ARVGYSSAVP TGGGSAGGDG SYRQQYSSHP 1020 YTMHGFSAVD GVGSAPPAAL GPSALQLQRT RSTVAAFGSP MRLLGPPIAR ATSEAAAVVA 1080 AAARNAAVHE ASQFLSHNHQ QQQQQQRSGS GGVTPPAVSG GEGSLGFGYA RGGTGDGSST 1140 GAAAGATTGT TGAADAGLTV SSSLEFVSGG SVGARVVEGA AAAAAGGGLL GGDGDGDDRV 1200 DMIDYLMDEL GIQVGTRSAP QSPMLTQYQP QQLQQQQQQQ QPQQQPQQHQ QQWQKQLQQR 1260 AQQQQHVEAM AMAHGGASGT GHPVSAMPVH FAAVSAVATA EVPSPAMAAT SAAFAAVAVG 1320 SPPPAVDDHA HSAAVGIGQP YGAAGSSSGH THAYPVHAYA AANTASAVQV TQHQPQQTQQ 1380 QTQQPAGGWV EGAWHPVAAG MPPLPPPPPR QHLPPPPWYH RQLRQPPAAP LYPPAAAPLL 1440 AHHHTAYAAA AAWGSSHRPA AAGTAAGPWG PPGHTPPAVP AAAAGGSEPA AAPHRPHSIA 1500 WPASAASVAV AGATAGAAAA ALMTGQPRAV YATDATTWTA GPNGGAAAPP PAVLARARSL 1560 GAAGGYYGHA ASASAAYLYA YHLQPSAQPP PRQDLLRSRP QQLGSAPPAA GGPPAAHYAS 1620 TAAAANWSHP PVCEQPVPAG VVAAAAGMDA PHALYATWTA RSGRRGASDR TTGTAAGSFQ 1680 QQLQHQQHLQ QQHYQPQQVA AAAAAAAAAV PGHGGGAWMS ASEQQSADEQ WAAQPHPTYP 1740 YRCQQ*

Sequence ? help Back to Top

Protein Sequence Length: 1746 aa Download sequence Send to blast

MGREGPSRRA WTACEYQSLC VAHAHAGNKW ALIAKHFRTR TDADVKNIFY STLRSVKPST  60
ENLALRVYAQ MVGPTCGDPE LRMRALEAAK AAVEAAAVHG LPDGSSASAA DGAAEGIGEG  120
AAGPSGSAAA PAGQQQLQPA VAEAGGEGAG GAGGSDRDGG SDSGGEDGGG EGEGAGEDGD  180
GRAGGGGGGA VANPFKWSIL RNVARLRFFK SAGKGKNKKR GAPGGGAGRQ QRVTSGEGEE  240
AQAAAGGIGH GDAAAAAATG AGSTAVPGND HRSAAATVGL TAAAGADHGA AAAAAAAVPR  300
LPPTAAEQQA AAAVNEPRPI RSRSQPLWYN PAGAPIGVGG GANNGGGGAG YATQSGSGSG  360
SKRAATANGD ATMELRRRRR RSGGSTSSRG SSGGDKDGGV EDGAAAAAEG SGGGPGGHQL  420
GGRHQHPSSY HRGTTAPVLL LLSGGAAASP HAAGGASGGG LSSSALYSGS DNNAQQGPLL  480
SYFTMDEDTD FDFEEGEGEA EVFDTRSGEL GGLGSSGGGA AAGGFGGGGT NDGRGSGNGA  540
RGGHNCSAAE VRWSLAERAQ AATGAAAAAA AAAVVAAAGA GVGAAASGAA AMLAPAFPAS  600
SPRRVHLHAC TPRRQQEQQL RLEEQQRQQQ QEQQEQQLMQ QEHHRQQQQM QQQHQQQNLA  660
QQQQHQQQQQ QLQELQLHQQ LVLQQHQQAQ AQQRHAHRSH PLHSQRPPFG GMTPLAAHAA  720
SPCTSSMAIN GIAASSSSGM PAFGAHAHAG CAADAPAVSQ PLPRLLPTNP FSVSAETLAP  780
RAVAVAAPGS AAAAQSLTPS PLHPSAAPQP SPAFTNPFLL QQHGCPPVSP PLSSSSAAFP  840
APPLGVAGNG AQMQQAPPPQ QQQPSWQAAA PASHQHHQHQ QPASGTGAAE PHFDDDDFLP  900
DVPSFRAMAE DQAAAAAAAA AAEAGAGGIS GLAAAVAGGG SSGARAAGAQ QQTHSELMLA  960
GTAFGGFAPA TATGHRTSTS APVPNAIARD ARVGYSSAVP TGGGSAGGDG SYRQQYSSHP  1020
YTMHGFSAVD GVGSAPPAAL GPSALQLQRT RSTVAAFGSP MRLLGPPIAR ATSEAAAVVA  1080
AAARNAAVHE ASQFLSHNHQ QQQQQQRSGS GGVTPPAVSG GEGSLGFGYA RGGTGDGSST  1140
GAAAGATTGT TGAADAGLTV SSSLEFVSGG SVGARVVEGA AAAAAGGGLL GGDGDGDDRV  1200
DMIDYLMDEL GIQVGTRSAP QSPMLTQYQP QQLQQQQQQQ QPQQQPQQHQ QQWQKQLQQR  1260
AQQQQHVEAM AMAHGGASGT GHPVSAMPVH FAAVSAVATA EVPSPAMAAT SAAFAAVAVG  1320
SPPPAVDDHA HSAAVGIGQP YGAAGSSSGH THAYPVHAYA AANTASAVQV TQHQPQQTQQ  1380
QTQQPAGGWV EGAWHPVAAG MPPLPPPPPR QHLPPPPWYH RQLRQPPAAP LYPPAAAPLL  1440
AHHHTAYAAA AAWGSSHRPA AAGTAAGPWG PPGHTPPAVP AAAAGGSEPA AAPHRPHSIA  1500
WPASAASVAV AGATAGAAAA ALMTGQPRAV YATDATTWTA GPNGGAAAPP PAVLARARSL  1560
GAAGGYYGHA ASASAAYLYA YHLQPSAQPP PRQDLLRSRP QQLGSAPPAA GGPPAAHYAS  1620
TAAAANWSHP PVCEQPVPAG VVAAAAGMDA PHALYATWTA RSGRRGASDR TTGTAAGSFQ  1680
QQLQHQQHLQ QQHYQPQQVA AAAAAAAAAV PGHGGGAWMS ASEQQSADEQ WAAQPHPTYP  1740
YRCQQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	380	RRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre10.g421021.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3D962	0.0	A0A2K3D962_CHLRE; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Cre10.g421021.t1.2