PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre09.g411950.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 1764aa MW: 165551 Da PI: 6.5579

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre09.g411950.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.9e-08	3	29	19	47
TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47 G++ W++Iar+++ gRt++++k+ w++ Cre09.g411950.t1.1 3 IGNR-WAAIARHLP-GRTDNDIKNLWHST 29 6999.*******.*******99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.324	1	34	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-11	2	31	IPR009057	Homeodomain-like
Pfam	PF00249	7.3E-6	2	28	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.39E-6	3	35	IPR009057	Homeodomain-like
CDD	cd00167	1.11E-4	5	30	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1764 aa Download sequence Send to blast
MEIGNRWAAI ARHLPGRTDN DIKNLWHSTL RSKTCRRSNV LYSYLQLVRD CSDDAGARRA 60 AYDKALGMTG GATGGGGGGG GAGGGDSEED DDKPGGMLSA AGASTGRAAG GGAGRDLLTA 120 AEVSPAAAGA AAAHLGAAMP PPARASGPPS THSPSQGPSS HRTSYNGGGT DDSRGGTGPG 180 EGRLLAGIGV GGGGGGGGSG AQHHMYFGAG GGGGGAGGLN AHLAWIKDGY NTSTSASSGP 240 HSGAPSASAS FIGTASPFFQ PPPVAGLAGN SFSAGGGTGG GGGGAVAGGM GLLLPLQQQQ 300 QQQLQLQLQP PQHRSGSAAR PFNMGPSLLG QPSLLQPRGS GGPGVGSGAG GLGLGLGGGG 360 SGVGLGLGQG SPLVGAAGGG MAELLQHLQG QQARSTPASH GSDYVAAAFS GGGSLVNERS 420 LPHLSDLALG SAGGGGGGSS TGGLSPVSVA GGGPGSTGPS WMGGGGGRGG APNLQAQLQL 480 QLQHQQGQGL LQPFGSRGHH NPPTASVSQP NLMSGVSGLG AMGLGGLGGL GGGGSGLRVG 540 GAGVVGGASR GVGPSGTIEL DPGAGLGMGM SMGMGAPGVG GGGGGGGGGP NRTRHSFHGV 600 GGRGGGGAPA DQQTSWAGAG GGVSTLQNEL LSGGGGGGGG GDGGRELIMD SGDWETNRAR 660 RRQRLSFPGS GAGEDGGEGG GGGGGGGGGG GGGNGNVAYG TGPGGGGGGG GWSAPSLARQ 720 LQLQPGALRQ EGSLLLQQQQ LQAHQRRSFD SAGVGLTSGV AATCSAAAIE NASADVGLIT 780 AADIWEARGG SQQQDEQHRG DRDGRDADGD VAMEDASQQQ QQLQQPADTA PEAAAAAAAA 840 APLGRQGGGG GAVAAALADG GAGLVVVAAA ADALESQGGG SGGGSGEAAV TLSGGVARPR 900 PGGGVGPGSG GVSRLAAALA ADGLPTTAAA AAVAAGIVGD DDVCDVSLNA LCRLPSKTAV 960 SGAAGGFGSG AGGFSSPLAG LVAVAPVSRD DEEGEGSDRE REAPQHRRQQ QQQRQQQQQQ 1020 QQQQEAVGTS LAQVGGPARQ SPADAAAAAS PPHSQSHGGP HSHSGPNSHS GPNALSGPNS 1080 SSQQHVSGPQ SLPGPGGAAG ATAGFGAAPT GGGGAGGDGG PGCAEGEAGQ PSGGWRPGTL 1140 SGQPLAQLQQ RWRQEVEELQ RVRQQHPASQ QQQQQQQQQQ LLGMPTRSQQ HASPPSGTSG 1200 MAQGGGGPQA WQSEPLQDHH HQHQQHQQHQ QHQQHQQRHQ QGGMWAEGGA APGVPLSSAR 1260 GGGGGRPAGL DPLDELLERL DKVEGEEMVD VMTLMTATQS EGGRPNLGWG AGGAGGGGGA 1320 GAGQGGGWHG GGAGGWGRGG DGGGGGGDTA PSWPQGPGGG GWVDTASLGA RLGPGAGAGP 1380 GAGLGLAEGR GVMGGALGIG LAALGGGGSN APHSANNSSS GAFGTHGWAG VAAALQVGNG 1440 SNTNQGGAGG AGGSMAHLGG GGGGHVSTGL LPYIIGGGGS VGGGHTSGSH PLHQAASLSH 1500 SPPVPQPHAS PALSGSPGFG GGSSAALMGE FKMGIGGGGI GGGGGGLSFG TALHRASESN 1560 AFYSEGRFGF GGTGGGRGGG SSGLSLFGGG GGGGPGGGGG GNRSAPVPFE AFAGAGLSQQ 1620 QGRHGLGPTE LLSAGPLGRL GTGNCSNPGP SGGTAGGPGG GGGARRASTL SGHGALLAVA 1680 SASAPGGGGG GGGGGGVGGG GMLTDMPVTL GMGDDEVADC LESMMAEADA AVGPGGGPGG 1740 GGGGGGGAVR DGSAGMLTSF AFN*

Sequence ? help Back to Top

Protein Sequence Length: 1764 aa Download sequence Send to blast

MEIGNRWAAI ARHLPGRTDN DIKNLWHSTL RSKTCRRSNV LYSYLQLVRD CSDDAGARRA  60
AYDKALGMTG GATGGGGGGG GAGGGDSEED DDKPGGMLSA AGASTGRAAG GGAGRDLLTA  120
AEVSPAAAGA AAAHLGAAMP PPARASGPPS THSPSQGPSS HRTSYNGGGT DDSRGGTGPG  180
EGRLLAGIGV GGGGGGGGSG AQHHMYFGAG GGGGGAGGLN AHLAWIKDGY NTSTSASSGP  240
HSGAPSASAS FIGTASPFFQ PPPVAGLAGN SFSAGGGTGG GGGGAVAGGM GLLLPLQQQQ  300
QQQLQLQLQP PQHRSGSAAR PFNMGPSLLG QPSLLQPRGS GGPGVGSGAG GLGLGLGGGG  360
SGVGLGLGQG SPLVGAAGGG MAELLQHLQG QQARSTPASH GSDYVAAAFS GGGSLVNERS  420
LPHLSDLALG SAGGGGGGSS TGGLSPVSVA GGGPGSTGPS WMGGGGGRGG APNLQAQLQL  480
QLQHQQGQGL LQPFGSRGHH NPPTASVSQP NLMSGVSGLG AMGLGGLGGL GGGGSGLRVG  540
GAGVVGGASR GVGPSGTIEL DPGAGLGMGM SMGMGAPGVG GGGGGGGGGP NRTRHSFHGV  600
GGRGGGGAPA DQQTSWAGAG GGVSTLQNEL LSGGGGGGGG GDGGRELIMD SGDWETNRAR  660
RRQRLSFPGS GAGEDGGEGG GGGGGGGGGG GGGNGNVAYG TGPGGGGGGG GWSAPSLARQ  720
LQLQPGALRQ EGSLLLQQQQ LQAHQRRSFD SAGVGLTSGV AATCSAAAIE NASADVGLIT  780
AADIWEARGG SQQQDEQHRG DRDGRDADGD VAMEDASQQQ QQLQQPADTA PEAAAAAAAA  840
APLGRQGGGG GAVAAALADG GAGLVVVAAA ADALESQGGG SGGGSGEAAV TLSGGVARPR  900
PGGGVGPGSG GVSRLAAALA ADGLPTTAAA AAVAAGIVGD DDVCDVSLNA LCRLPSKTAV  960
SGAAGGFGSG AGGFSSPLAG LVAVAPVSRD DEEGEGSDRE REAPQHRRQQ QQQRQQQQQQ  1020
QQQQEAVGTS LAQVGGPARQ SPADAAAAAS PPHSQSHGGP HSHSGPNSHS GPNALSGPNS  1080
SSQQHVSGPQ SLPGPGGAAG ATAGFGAAPT GGGGAGGDGG PGCAEGEAGQ PSGGWRPGTL  1140
SGQPLAQLQQ RWRQEVEELQ RVRQQHPASQ QQQQQQQQQQ LLGMPTRSQQ HASPPSGTSG  1200
MAQGGGGPQA WQSEPLQDHH HQHQQHQQHQ QHQQHQQRHQ QGGMWAEGGA APGVPLSSAR  1260
GGGGGRPAGL DPLDELLERL DKVEGEEMVD VMTLMTATQS EGGRPNLGWG AGGAGGGGGA  1320
GAGQGGGWHG GGAGGWGRGG DGGGGGGDTA PSWPQGPGGG GWVDTASLGA RLGPGAGAGP  1380
GAGLGLAEGR GVMGGALGIG LAALGGGGSN APHSANNSSS GAFGTHGWAG VAAALQVGNG  1440
SNTNQGGAGG AGGSMAHLGG GGGGHVSTGL LPYIIGGGGS VGGGHTSGSH PLHQAASLSH  1500
SPPVPQPHAS PALSGSPGFG GGSSAALMGE FKMGIGGGGI GGGGGGLSFG TALHRASESN  1560
AFYSEGRFGF GGTGGGRGGG SSGLSLFGGG GGGGPGGGGG GNRSAPVPFE AFAGAGLSQQ  1620
QGRHGLGPTE LLSAGPLGRL GTGNCSNPGP SGGTAGGPGG GGGARRASTL SGHGALLAVA  1680
SASAPGGGGG GGGGGGVGGG GMLTDMPVTL GMGDDEVADC LESMMAEADA AVGPGGGPGG  1740
GGGGGGGAVR DGSAGMLTSF AFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	600	606	GGRGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre09.g411950.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DFN3	0.0	A0A2K3DFN3_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9880	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	3e-09	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Cre09.g411950.t1.1