PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre09.g411600.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 2173aa MW: 218998 Da PI: 7.2617

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre09.g411600.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4e-10	38	77	1	42
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 + +W+ eE +ll++ ++++G++ W++Ia+ ++ gRt+ ++k+ Cre09.g411600.t1.1 38 KPPWSSEEFLLLARWHAEMGSR-WAAIAKLLP-GRTESDVKN 77 579*****************.*****.******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.06E-10	32	83	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.126	33	87	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-11	34	83	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-9	37	85	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-9	38	77	IPR001005	SANT/Myb domain
CDD	cd00167	2.14E-7	40	77	No hit	No description
PROSITE profile	PS50090	3.892	889	911	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2173 aa Download sequence Send to blast
MGDARSVGGG HSNELIAGLY PRPAILAPSD ATDRRVSKPP WSSEEFLLLA RWHAEMGSRW 60 AAIAKLLPGR TESDVKNLFY GTQRAKRAPR SQFLFFYVQA LGPPDSRGAD DHATRQAAFA 120 AAKFALEAGQ LRLEGAVEPE VVQRLLGPPG PGTSLRQAAA AAGGDGSVDL PPINEWLTSA 180 AAAAAAAAAA AAVAERADPA AAAAAAAAAA AAARAECGGG GGGGAATAGV RGQAPAGFRS 240 VAGSGMDGEA GAALVAAAAA AATAAAIASR GGGRAAAPAG GAAKPGSGCG GGGGGALPLA 300 VAGGGLATRN PRALPPRRIQ LMPEDAAAAG AAMVAAAAPP AVAAAAAAAA AEGGRGEAGW 360 SEPPLPAAAA AAAGMDMAGA ADSPSSSASA SATIGGIPAG AGCHRPGAGR GLDRLAAVAA 420 AAAAAYASSR APMTLDLSRT APLNLMMDLN LGGRGGGGRG EGGGGGADSD GSPAGGGGCA 480 ARAPPLRSGG SQAGPVGYAA AGAPAPGDGG PPSASASAVA AAAAAARAGR SGRHGQPLPS 540 FDDGPDTGAG TVRGQPTAGG GGGAPDQWPA GGGGESPQGR ARDPPPHSDE ADWGNGNGNG 600 GSGGGGGGGG GGGGGGGGGG GGGGGGGGGG GWRHSRAPHG PGVSGPGRHH QHHQHHQHSE 660 SPSATSLTGS LVRLDLSGQQ PAEPHHPHQH HQQHQQPHRQ QHQQPRQQPQ PQRDSPQRDS 720 PQAQSWPAAR LLGEGPQGLD ASPSAQAGSG GGGGGGGGVG QDSGGPNSGP ASGGPGSKRL 780 PPMLLQHGPM AAAALSDGGF GGGGGGGGGS AGDTPVPAHM RNDGGGGRQQ YGERQAPPSQ 840 SQPLPARVAA GAAAAAAAFG AEGRREQCVG HPHPQQQHPH QQQGPGKTWT DDETRRVMEA 900 ARRLHKRQAW EDEMVTAGVG ERRRQPPPGS QCGAGGVSEG GEWAGQAGAE GSRANYSGCR 960 AGAGPPSAAA AIGGSREGVG GGAWERRPPG GLGPSFGRPG PYGPMSADVL MAPADATAGA 1020 AATAGAAATA MPRRGVATVG GYDERMGECD DRQGCSTAVA YRALQQPQQP QQQQQPQAQY 1080 RAQHRTQQAA MQQQQPQQQQ HSQQQQQQGA WGRGYGSPGG RPSPLARTAA AHGAQPQPQQ 1140 HQQHRPPSLH TASILEGHAE PPPCGSGTPY DRPAGVARAS MDGAVPRTMP YGDGPASAPP 1200 DHIRYRYSPH ATAPGGSGGG VGGGGGAAAT RYSHGAVTVK QEPAPYTEAE DRLYSSSYNC 1260 QQPPLAEPLI AAGQQQQEPV PQRYPQEQQQ QQQPQRRQPY TSTATCAGRR HAHAPYGAPN 1320 SGPEGPCTAP SAYGAGNGDD GDYLPPRTVS VAHLAPSDPE TADAGSFVLY RTAPGSGREH 1380 AVVPPPPHPK PPPPGSAAAA LMAAAAAAMA ANPYNSSGPS SGPSTGRSVA PQSGRGAACA 1440 DAVAAPAAHP PAYYAEEEEE QEEDQWIARP PHQQHQQHQQ PGLYGRADAP RGPPSGAAGA 1500 YAPQQRQHHH HHQRPPQRQQ HHHHQQAHQQ PMPRQGSYGP PPQQQPAAEG RGEWVLRDRR 1560 PSQQPNPSPF RRDPYGEPPF QDVPSGGGGG GGGWDAAADG AEEEYPEEVV AESQPNLAPP 1620 LPRAASAAAV PDAYEAQRHS QERAGYCSAN AARYANAGRQ AAQRCPQQQQ QQQQAYWPAA 1680 PPPAQQQQSH GPSRFQFRDP NGYSGYPCDL DPTGLQPPQR QPQPPPPPPQ QLRPYASAPQ 1740 PQPPHQPPQQ HQTEPQVYIK QQPYDEVDED YGRPVRPTGH FVHAQSGSMP SGGGGGGGVP 1800 YAPVSYRDGN DYAPPGEAGN GSGGGGGVGR YPPPVRPWHV PVPLPLAQAE AERGRYQPPG 1860 GSRQRCYEDD YMVIDGPASA PPRTYAAAAP AAPSSGPWAA TGGGGGLAAA AAARSRPIAL 1920 GSAPWPSQPP PPPLYEVEEV VAESSVAGDL APPPPPGPRS AQAFGRSSWR GVEGAAAGGG 1980 GRSGEYPSAA AAVGASHGTG CGGDGAGGGC CGGYPGSYAG DGEGSGMVMD VAPPAATADT 2040 EDDYNGDGYG RPQHRRYHAP RPDAEQQLAA AAQHSRPQPQ YRQSHQQQHP HQPYTQHQQR 2100 AARAPAGAPP PAQHPYQQHQ HQHPHHHPQP HSQQQPQQQY QQHELQQYRP VNDGRFGDGD 2160 DCGASELDRS SL*

Sequence ? help Back to Top

Protein Sequence Length: 2173 aa Download sequence Send to blast

MGDARSVGGG HSNELIAGLY PRPAILAPSD ATDRRVSKPP WSSEEFLLLA RWHAEMGSRW  60
AAIAKLLPGR TESDVKNLFY GTQRAKRAPR SQFLFFYVQA LGPPDSRGAD DHATRQAAFA  120
AAKFALEAGQ LRLEGAVEPE VVQRLLGPPG PGTSLRQAAA AAGGDGSVDL PPINEWLTSA  180
AAAAAAAAAA AAVAERADPA AAAAAAAAAA AAARAECGGG GGGGAATAGV RGQAPAGFRS  240
VAGSGMDGEA GAALVAAAAA AATAAAIASR GGGRAAAPAG GAAKPGSGCG GGGGGALPLA  300
VAGGGLATRN PRALPPRRIQ LMPEDAAAAG AAMVAAAAPP AVAAAAAAAA AEGGRGEAGW  360
SEPPLPAAAA AAAGMDMAGA ADSPSSSASA SATIGGIPAG AGCHRPGAGR GLDRLAAVAA  420
AAAAAYASSR APMTLDLSRT APLNLMMDLN LGGRGGGGRG EGGGGGADSD GSPAGGGGCA  480
ARAPPLRSGG SQAGPVGYAA AGAPAPGDGG PPSASASAVA AAAAAARAGR SGRHGQPLPS  540
FDDGPDTGAG TVRGQPTAGG GGGAPDQWPA GGGGESPQGR ARDPPPHSDE ADWGNGNGNG  600
GSGGGGGGGG GGGGGGGGGG GGGGGGGGGG GWRHSRAPHG PGVSGPGRHH QHHQHHQHSE  660
SPSATSLTGS LVRLDLSGQQ PAEPHHPHQH HQQHQQPHRQ QHQQPRQQPQ PQRDSPQRDS  720
PQAQSWPAAR LLGEGPQGLD ASPSAQAGSG GGGGGGGGVG QDSGGPNSGP ASGGPGSKRL  780
PPMLLQHGPM AAAALSDGGF GGGGGGGGGS AGDTPVPAHM RNDGGGGRQQ YGERQAPPSQ  840
SQPLPARVAA GAAAAAAAFG AEGRREQCVG HPHPQQQHPH QQQGPGKTWT DDETRRVMEA  900
ARRLHKRQAW EDEMVTAGVG ERRRQPPPGS QCGAGGVSEG GEWAGQAGAE GSRANYSGCR  960
AGAGPPSAAA AIGGSREGVG GGAWERRPPG GLGPSFGRPG PYGPMSADVL MAPADATAGA  1020
AATAGAAATA MPRRGVATVG GYDERMGECD DRQGCSTAVA YRALQQPQQP QQQQQPQAQY  1080
RAQHRTQQAA MQQQQPQQQQ HSQQQQQQGA WGRGYGSPGG RPSPLARTAA AHGAQPQPQQ  1140
HQQHRPPSLH TASILEGHAE PPPCGSGTPY DRPAGVARAS MDGAVPRTMP YGDGPASAPP  1200
DHIRYRYSPH ATAPGGSGGG VGGGGGAAAT RYSHGAVTVK QEPAPYTEAE DRLYSSSYNC  1260
QQPPLAEPLI AAGQQQQEPV PQRYPQEQQQ QQQPQRRQPY TSTATCAGRR HAHAPYGAPN  1320
SGPEGPCTAP SAYGAGNGDD GDYLPPRTVS VAHLAPSDPE TADAGSFVLY RTAPGSGREH  1380
AVVPPPPHPK PPPPGSAAAA LMAAAAAAMA ANPYNSSGPS SGPSTGRSVA PQSGRGAACA  1440
DAVAAPAAHP PAYYAEEEEE QEEDQWIARP PHQQHQQHQQ PGLYGRADAP RGPPSGAAGA  1500
YAPQQRQHHH HHQRPPQRQQ HHHHQQAHQQ PMPRQGSYGP PPQQQPAAEG RGEWVLRDRR  1560
PSQQPNPSPF RRDPYGEPPF QDVPSGGGGG GGGWDAAADG AEEEYPEEVV AESQPNLAPP  1620
LPRAASAAAV PDAYEAQRHS QERAGYCSAN AARYANAGRQ AAQRCPQQQQ QQQQAYWPAA  1680
PPPAQQQQSH GPSRFQFRDP NGYSGYPCDL DPTGLQPPQR QPQPPPPPPQ QLRPYASAPQ  1740
PQPPHQPPQQ HQTEPQVYIK QQPYDEVDED YGRPVRPTGH FVHAQSGSMP SGGGGGGGVP  1800
YAPVSYRDGN DYAPPGEAGN GSGGGGGVGR YPPPVRPWHV PVPLPLAQAE AERGRYQPPG  1860
GSRQRCYEDD YMVIDGPASA PPRTYAAAAP AAPSSGPWAA TGGGGGLAAA AAARSRPIAL  1920
GSAPWPSQPP PPPLYEVEEV VAESSVAGDL APPPPPGPRS AQAFGRSSWR GVEGAAAGGG  1980
GRSGEYPSAA AAVGASHGTG CGGDGAGGGC CGGYPGSYAG DGEGSGMVMD VAPPAATADT  2040
EDDYNGDGYG RPQHRRYHAP RPDAEQQLAA AAQHSRPQPQ YRQSHQQQHP HQPYTQHQQR  2100
AARAPAGAPP PAQHPYQQHQ HQHPHHHPQP HSQQQPQQQY QQHELQQYRP VNDGRFGDGD  2160
DCGASELDRS SL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	456	464	GGRGEGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre09.g411600.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DFM4	0.0	A0A2K3DFM4_CHLRE; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	2e-09	myb domain protein 98

Link Out ? help Back to Top
Phytozome	Cre09.g411600.t1.1