PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre09.g399289.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | SBP | ||||||||
Protein Properties | Length: 983aa MW: 95045 Da PI: 6.5102 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 93.9 | 1.5e-29 | 594 | 671 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C+v+gC+ l+ +++y++r+k+Ce+h k ++vl +g+ +rfCqqC+rfh l+efD ++rsCr+ L++h +rr k+++ Cre09.g399289.t1.1 594 MCHVQGCNRSLAGLRDYYQRYKICEHHLKVSQVLKDGVPHRFCQQCGRFHPLTEFDGDRRSCRTMLQRHCHRRAKQKQ 671 6*************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.710.10 | 5.3E-17 | 27 | 134 | No hit | No description |
SuperFamily | SSF54695 | 9.42E-13 | 28 | 132 | IPR011333 | SKP1/BTB/POZ domain |
Pfam | PF00651 | 2.0E-12 | 31 | 133 | IPR000210 | BTB/POZ domain |
PROSITE profile | PS50097 | 10.344 | 40 | 107 | IPR000210 | BTB/POZ domain |
SMART | SM00225 | 1.4E-8 | 40 | 137 | IPR000210 | BTB/POZ domain |
Gene3D | G3DSA:4.10.1100.10 | 4.5E-28 | 589 | 656 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.897 | 592 | 669 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.71E-26 | 594 | 672 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.3E-28 | 595 | 668 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 983 aa Download sequence Send to blast |
MPILQLDRAG REREEPPCHL DLSKLIQAGT KSFFNNPLLS DIVLVCPDGR ALHCHSVILA 60 AASRRLAAAL KQGNWTPGQQ MPVKGVDSDA LETLVYAFYT AECPLELARV PALYDAAIKL 120 EVPSLAPALE QYTASALQPH NCCAVLELCL GAGVGPLAEL VLEWIRSRVA DVVPGPEFRA 180 CRLETAALIC KDLAGRSQLV GLQVAVAWLT ASSARGSLVG VFAEATGLAV DAIQAVANSG 240 GALGPIGGLG AAGGGGGGGA GAGGGGMSGL GGLGASLSLH GPHGPSISLQ LAVGGGGGGA 300 SDGLGPLGLG GGGGLGGAGV GGSGSQVLQL LPPPGGLGGG GGGPNDLSGL QSLLGGGPGG 360 LGGKAGAGMA GLGGLGGLGG LGPGLGLDAL ADAAEGERMQ KRLRLGAGGP GGFGALAESG 420 SATSRDLSSA LMDGPLRLGG GGPGRDLDLP SLSMGGVGLG GGGLGGGLGT SSGLSGGNGG 480 GGGVGGGRGR GRGGGRRRRG TSASDDDEDY APGGGRSGGS GGRSRAQELV YDADAAAMDD 540 PAAGSGGGGS GPGEDAPSGG HGDDSGAGGG GGGNIPANTP VLMTGRRTPA QKGMCHVQGC 600 NRSLAGLRDY YQRYKICEHH LKVSQVLKDG VPHRFCQQCG RFHPLTEFDG DRRSCRTMLQ 660 RHCHRRAKQK QELAEVLAQR YEEKQVAASM TAVMAAMARG TPAGVPALPP MLQLQYLAGL 720 PAAAAAAAGR DDGGAKDEDM DGRGGGGRSL PAGLHSPPSR AALTEAVQQR ARKQQATVLS 780 QSGLLGLAGS GEGLPEGQLA AAMAAAAAGL TLGLDNLPAV GQLPGSGGVA ERKFGDQELL 840 TGGGGNGKEE QRAGAAGAGS PPSAAAAGRR AGGEEPASGK HEPADTEGVG GGGGAGDSGE 900 DGNGSRPATG GRFAAASKGE PGGGSGDGLQ RVDGGGDSPG GNGAGAVGAQ WGAGDAAACG 960 ARGGRDAAVP SGLDGRSQPR DL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-17 | 594 | 668 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre09.g399289.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001694726.1 | 1e-141 | predicted protein, partial | ||||
TrEMBL | A0A2K3DEV5 | 0.0 | A0A2K3DEV5_CHLRE; Uncharacterized protein | ||||
STRING | EDP02310 | 1e-140 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-20 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre09.g399289.t1.1 |