PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre09.g391353.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 954aa    MW: 104137 Da    PI: 8.5769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre09.g391353.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.2e-122568347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +W++ E+ l+++ + q G++ W+ Ia+++  gRt++++k+ w++ 
  Cre09.g391353.t1.1 25 SWSPSEEHLFAHIHSQCGNR-WAEIAKRLKSGRTPNDVKNMWHST 68
                        7*******************.*******************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3491873IPR017930Myb domain
SMARTSM007176.9E-102271IPR001005SANT/Myb domain
CDDcd001671.33E-72569No hitNo description
SuperFamilySSF466895.93E-102575IPR009057Homeodomain-like
PfamPF002491.9E-112567IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-132570IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    Send to blast
MLSSLSSSGA ATLAPLAVRQ TKLLSWSPSE EHLFAHIHSQ CGNRWAEIAK RLKSGRTPND  60
VKNMWHSTLR AKVCRRNSFL FTYLRHLGDN WDNAEARTAA YDHALRDMND GALEPARLSR  120
RVRRALKAVG LATTTGLVGQ HMQPTPDPQQ GLGLAGIEGA TLVVPLDDKP ARARSRPMQI  180
RLMPGTLDPR GRSQSPPEIA DVLAAAAGAA AAVGVAPLEP LQPPQPPEGL APQLPPQLPH  240
VPPARVRRPQ SHLQLQVDGQ QHEGLTPDML NLHVSDSGHS TRATSADGGA SETSSGVAGR  300
MLPRSSGGVL GSYASGPLLS VPAAAASAAS VVPAAAAEAA LSHYQQQELC RGYARQTPLS  360
ATTSSPSTAV VEVPVLRQQS GRQQPQQQHQ QPLQHTRPSQ QAQPPMAVHC WPPPSSGQHH  420
HQPQQSSRSD EYASCEGSSQ AAVVAQLRAH ASAPAAMALR RSSPGVTVRG AGGAQGGLQV  480
APDHGQSYYQ QPQPQRQVQQ VQEQQQMDQD SFGCGDLRDL HAGHMPQSHV RSLCSASALS  540
DNLRFAHPQQ HALRQSQQSQ QQHQHQQMPL QHSSSWHHQQ TQQHQQTQPE VVDFTMDDGP  600
MPARPARHMR SGGDNNFGGH RCSAPGNIAA AHDGVPVLDN YQDACYRWRP SPSQPHAMVA  660
QQHQHQHQPQ HQPQGHARRP ADSAAPYSLP HQPQSRAPLA RPLPQAASEA WRQQPNGRQP  720
YHMQPQQQQQ QRRDLLQLSL QADMAAAPAA AAAAVDRMPV EGLGGHYAAA AAAAGSQELT  780
LPYRQSRVTL VEPVLQLHPH SQQHQPQTRQ PCHQYPRHQQ QPEQQQQQQQ QQTEHPQQTE  840
QVLQVPHQQR WVQQPQPQPQ QQQQLFEDDY AMADAAAAAV GTQDEGQFLS AAQLVPPPAR  900
QLPLRTQMEG RQQQLQQHQG LQQERHPDTG STTEVLRSII LKLAHEQDQQ QRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre09.g391353.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DDI10.0A0A2K3DDI1_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-10myb domain protein 83