PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre09.g390023.t1.1

Common Name

CHLREDRAFT_195928, CRR1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

SBP

Protein Properties

Length: 1233aa MW: 127183 Da PI: 7.4683

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre09.g390023.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	112.5	2.5e-35	438	515	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC +dl+++keyh+r+++C+vh k ++vl +g+ qrfCqqC+rfh+l+ fD +++sCr++L+khn+rrr++++ Cre09.g390023.t1.1 438 VCQVPGCGKDLTNLKEYHQRYRICDVHIKLQQVLKDGRLQRFCQQCGRFHDLTAFDGNRKSCRDQLSKHNARRRRRAQ 515 6*************************************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.2E-29	435	500	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	28.547	436	513	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.97E-31	437	514	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.0E-30	439	512	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.49E-11	919	1069	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.1E-10	951	1087	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.94E-10	966	1062	No hit	No description
PROSITE profile	PS50297	12.7	970	1088	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1233 aa Download sequence Send to blast
MASDLANIFN DEEAGSDRAN SITSSDLDPF LLQGDDQTWA VEDWNWDPFN MFAAPKETPN 60 VACCQALKRR KVTEQSATSA PQQAAQQHHQ HAACQPCHGA SGSRAGPPAA PTAACCSMAP 120 GVQQHAPAPA PAQQLTGPLQ TALNSMMPGQ QQQRVADACG VSNMCHAPGM VAPPPPMPVA 180 APLAATGHQA GGMGMGHMNP AMGHMGWPAM PDMSNPAAAA AAAAAAASFF PTMGAGGRGP 240 LATMGWGAQP MALQMPSMGL PGFPGGHTQC APALQMPAVA FPTPSSGIFH QQASMAVPPS 300 ALPSPALGCS GDTTSLQGSA DNCAKPPCCS GNRATGPTCS GGRQQADSSN KAAPPPPKQP 360 AQNTVGARGG AAAPAPGDLS DFNISDSEDD DEVARRPSAA GTQRGGVGNA AALNAAAYAN 420 LGDIVSLQDV GDDTGAMVCQ VPGCGKDLTN LKEYHQRYRI CDVHIKLQQV LKDGRLQRFC 480 QQCGRFHDLT AFDGNRKSCR DQLSKHNARR RRRAQAEQAK GRAAAQEAAV AAAGAMAAAA 540 AVGGAAGGAP AVPGFEGGDV GKLLACLMQN PTQLHALRLL LGVPTHPALP AAAPAAGLGM 600 AAGGDTAAQP DQARTYGLAR DILAGRNEFS PAFESEHRMI RLSMKLFNKT PADLPHDLRN 660 QVTSWLASAP LAMEASIRPG CVFLTVQMLV DEAGAQQAAA PGALHGLVEH LLTRTGCPFW 720 HMGMYTVQMG TDMLLVRDGK MAGDANVNAS GAAAPAATGE GAEAAARVRG DGRFPVVRRL 780 GPLAAVAGQP TVLKLHGLNL DAPGCSVILR WGNKHLKAHM QALSTHRAIV RLPPLPDLCG 840 PVWVEVARGA YLSPAKQLLV ARNEELVQEI NKLDVKTGPL RHDTVELLLQ DLALVLQHIA 900 AQPGVAAQLQ HAVIALKARR LLAMACDMGW AAVASAVLPL ACARCSCASE MVAAIHSAST 960 PSQTGAADKR GLTLLHRAVR SGSVSLLAGM LAWGDSHGYR WRVDAEGPAG ITPLHLSAML 1020 DDARIGLLLL DHCGWPAAFT HLRSDGGVTP FHLAFQMGHY QVDALMSALG GLHQVADPNN 1080 AAAINNAAAA AAAAMSPSRR SRCGNAAAMG CKPDPDEDVK PDLAALQRGG RNGGGGSGGC 1140 TELDPCENCH CTLPPLLLSI MASCTDCGRR RMCMETECNN AAQRCGDCGC GGARPTARVD 1200 SGEVCSSRQH GTIFSITALC QGCHANRTLA VA*

Sequence ? help Back to Top

Protein Sequence Length: 1233 aa Download sequence Send to blast

MASDLANIFN DEEAGSDRAN SITSSDLDPF LLQGDDQTWA VEDWNWDPFN MFAAPKETPN  60
VACCQALKRR KVTEQSATSA PQQAAQQHHQ HAACQPCHGA SGSRAGPPAA PTAACCSMAP  120
GVQQHAPAPA PAQQLTGPLQ TALNSMMPGQ QQQRVADACG VSNMCHAPGM VAPPPPMPVA  180
APLAATGHQA GGMGMGHMNP AMGHMGWPAM PDMSNPAAAA AAAAAAASFF PTMGAGGRGP  240
LATMGWGAQP MALQMPSMGL PGFPGGHTQC APALQMPAVA FPTPSSGIFH QQASMAVPPS  300
ALPSPALGCS GDTTSLQGSA DNCAKPPCCS GNRATGPTCS GGRQQADSSN KAAPPPPKQP  360
AQNTVGARGG AAAPAPGDLS DFNISDSEDD DEVARRPSAA GTQRGGVGNA AALNAAAYAN  420
LGDIVSLQDV GDDTGAMVCQ VPGCGKDLTN LKEYHQRYRI CDVHIKLQQV LKDGRLQRFC  480
QQCGRFHDLT AFDGNRKSCR DQLSKHNARR RRRAQAEQAK GRAAAQEAAV AAAGAMAAAA  540
AVGGAAGGAP AVPGFEGGDV GKLLACLMQN PTQLHALRLL LGVPTHPALP AAAPAAGLGM  600
AAGGDTAAQP DQARTYGLAR DILAGRNEFS PAFESEHRMI RLSMKLFNKT PADLPHDLRN  660
QVTSWLASAP LAMEASIRPG CVFLTVQMLV DEAGAQQAAA PGALHGLVEH LLTRTGCPFW  720
HMGMYTVQMG TDMLLVRDGK MAGDANVNAS GAAAPAATGE GAEAAARVRG DGRFPVVRRL  780
GPLAAVAGQP TVLKLHGLNL DAPGCSVILR WGNKHLKAHM QALSTHRAIV RLPPLPDLCG  840
PVWVEVARGA YLSPAKQLLV ARNEELVQEI NKLDVKTGPL RHDTVELLLQ DLALVLQHIA  900
AQPGVAAQLQ HAVIALKARR LLAMACDMGW AAVASAVLPL ACARCSCASE MVAAIHSAST  960
PSQTGAADKR GLTLLHRAVR SGSVSLLAGM LAWGDSHGYR WRVDAEGPAG ITPLHLSAML  1020
DDARIGLLLL DHCGWPAAFT HLRSDGGVTP FHLAFQMGHY QVDALMSALG GLHQVADPNN  1080
AAAINNAAAA AAAAMSPSRR SRCGNAAAMG CKPDPDEDVK PDLAALQRGG RNGGGGSGGC  1140
TELDPCENCH CTLPPLLLSI MASCTDCGRR RMCMETECNN AAQRCGDCGC GGARPTARVD  1200
SGEVCSSRQH GTIFSITALC QGCHANRTLA VA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-21	434	512	6	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1128	1135	GGRNGGGG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Cre.8948	0.0	normal conditions\| nutrient deficiency

Function -- GeneRIF ? help Back to Top
Crr1 is involved in the transcriptional regulation of the FDX5 gene in the absence of oxygen or copper. [PMID: 20833896] Data show that activated HSF1 and CRR1 transcription factors mediate the acetylation of histones H3/4, nucleosome eviction, remodeling of the H3K4 mono- and dimethylation marks, and transcription initiation/elongation. [PMID: 21705643] These combined results prove that CRR1 is involved in HYDA1 promoter activation. [PMID: 22669892]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre09.g390023.t1.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ154260	0.0	DQ154260.1 Chlamydomonas reinhardtii copper responsive regulator 1 (CRR1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001694940.1	0.0	copper responsive regulator 1
TrEMBL	Q50H72	0.0	Q50H72_CHLRE; Copper responsive regulator 1
STRING	EDP02092	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5500	5	8
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-20	SBP family protein

Link Out ? help Back to Top
Phytozome	Cre09.g390023.t1.1
Entrez Gene	5720626

Publications ? help Back to Top
Kropat J, et al. A regulator of nutritional copper signaling in Chlamydomonas is an SBP domain protein that recognizes the GTAC core of copper response element. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(51): p. 18730-5 [PMID:16352720] Merchant SS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 2007. 318(5848): p. 245-50 [PMID:17932292] Lambertz C,Hemschemeier A,Happe T Anaerobic expression of the ferredoxin-encoding FDX5 gene of Chlamydomonas reinhardtii is regulated by the Crr1 transcription factor. Eukaryotic Cell, 2010. 9(11): p. 1747-54 [PMID:20833896] Strenkert D,Schmollinger S,Sommer F,Schulz-Raffelt M,Schroda M Transcription factor-dependent chromatin remodeling at heat shock and copper-responsive promoters in Chlamydomonas reinhardtii. Plant Cell, 2011. 23(6): p. 2285-301 [PMID:21705643] Pape M,Lambertz C,Happe T,Hemschemeier A Differential expression of the Chlamydomonas [FeFe]-hydrogenase-encoding HYDA1 gene is regulated by the copper response regulator1. Plant Physiol., 2012. 159(4): p. 1700-12 [PMID:22669892]