PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre09.g387850.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 1758aa MW: 165167 Da PI: 8.9862

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre09.g387850.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50	6e-16	47	95	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++sl+ l+k F+lp dAA Lgv + LKr+C ++ I+RWP+Rk++sl Cre09.g387850.t1.2 47 DLSLDALRKVFHLPCVDAAAALGVAHSKLKRRCHKLRISRWPQRKLASL 95 6899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.187	30	115	IPR003035	RWP-RK domain
Pfam	PF02042	9.0E-18	48	95	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1758 aa Download sequence Send to blast
MVKSKKPGEK KKTRADESGD DEDFGFDGAS DSGDDAADRL LPGGAPDLSL DALRKVFHLP 60 CVDAAAALGV AHSKLKRRCH KLRISRWPQR KLASLVFLRD ALPNDPRLTE PQRAYIVTKI 120 DDEYGRVMRD PNHPLDKELE QLRKSNYKLN YNRKLKQANK RGGSPADDLD APPPRSSGGR 180 RAGPRGGSKG DLAGGDGGSW RSPTSTGGNS DLGGFGGAPL GGLPLGGLGG GPGGGGGGGI 240 DGPMPAIPTL MTGGRGPRVG PPGPLSLAAV GGGAGTPTAS GADSGGGPGG PLALPPSGGL 300 GLGLGLQLGP GGGGGRGGGG GPMGYVGGPG DLGPGPGGWD GGPDDDMHGA GGPSLLLAGA 360 GGMGGGMGGG GGGGLYPTHS EPLPVGVGGG SAASSPRNLV QRRLGGVGSN SGHGGPGRRS 420 SLERMALLSV VADGKVVKQA SRRQSGSGSG GATPQALGLQ APGSPRGSGP RSPRALPRAM 480 ASPGGAAGRE GLLDSMWGGG SGGGPGQQRG GGVRGGMPGD GGWIGPPSGG VAGGSGPLGR 540 PHSPDLGPHM GGGGMPLQAL QSGGSGYGPA HSGGYGGPGG GGGDMGAGPG PGPGHYNDMS 600 GRGHHDSYGS APGSYGPNSA SGGGYGGPGG GGGGQGGGMG GYGGGGGRGG GYGPGPGGGG 660 GAPGGGGGGG LAAAGVNAIL GDADVAILAG LSHRPSLGME QLSAEELALL GIQGADRDLL 720 LDPIADASLD PLVDLLLLGD ALGGNGRGGP QGGGGGGGAA ADGYSAQRRI SEALAPLLGG 780 GVGGGLGGGG GGGGGGGGGY GGDVMAGPVG VSSLLRHPGG GGGGGGGGGL LAGVSAGGSV 840 SAPHRQHRLS SVTGAGGNGP QQRTSRFASS SLDGPQQHQQ VPQGQQHMQQ HPHQQHMQQQ 900 QQGPGGYGSR GPGLGPQRQY EDEPCGYGGS GGGGGGDGGG YGMDGGGGGG GGPGGYQSGM 960 GLGGMQAART SLHGLGGTAP GYGPGSGPGG GGGGGGSDYG RRMGGPGPGP GGLGGNPHAQ 1020 HLFTEGRHSA PGHIGIPGWD DQPGGGGGMG GPGPGGGGMA GGGGGGWHEG PDDCRSRGVQ 1080 GGMDSGLGPE GQFMGRGGGG GRGMATGYGG SGSGGGGGGW FDRGGGGGGG GGPMGSGSAG 1140 APPVPQQYRG GDYSGPGGGG GGGRGSMGGD VAGSAGARPS GMSAGGSQGQ GPMRRGMDPL 1200 DGDMPPAMGG RGAPPRRNSF SERMGPGGGG YGGGGGGGGG GGYGTGYGRP NTANGGPDSG 1260 GDWGDRGGGG VGGGGGSGQL GQPFSRQEQQ SAREQLARAM MRGGSSNGGG SGGPAALLAA 1320 QGQGGNSGGG AGSGRTHLSG ALTGGPTGPH GGVNSPPPET IASLQGLRLR NEMDDYGQRH 1380 PQHYQQHQQH QQHPHQRDMG GPGMEQQAYR QQHQQHQQHQ QQGPPHPHSH RRQQQQHDPP 1440 HGGYDGRQPY RGPPGGGGDG PRTGGRYNDG YGGPGGPGGG GGGGRYDAGP GGGRFEGGGG 1500 GGPGGGAGGG YYPGDPSGGR GAGPRRVSDS MSGGAGGGRG GGAGGPGGGA GGGPGGYYGG 1560 GPSPGPGAGG APRFSRTSDN MAVGGGGPGG GGPGPGPGGS GAGLLEALDH QLEGIDAFVD 1620 RNLDLLRRNS GGFGSFMAEM GLGRGDLGGL SFSGAGGMSF TGAGGGGGGG GPNGPGSSMS 1680 YGPGPDGVGG GAGPGGGGGA GLMGGLGSMD LETMRESLRR ELRQGSMEQW DDMVRGLGQP 1740 GPGGMGGGGM GGGGGGY*

Sequence ? help Back to Top

Protein Sequence Length: 1758 aa Download sequence Send to blast

MVKSKKPGEK KKTRADESGD DEDFGFDGAS DSGDDAADRL LPGGAPDLSL DALRKVFHLP  60
CVDAAAALGV AHSKLKRRCH KLRISRWPQR KLASLVFLRD ALPNDPRLTE PQRAYIVTKI  120
DDEYGRVMRD PNHPLDKELE QLRKSNYKLN YNRKLKQANK RGGSPADDLD APPPRSSGGR  180
RAGPRGGSKG DLAGGDGGSW RSPTSTGGNS DLGGFGGAPL GGLPLGGLGG GPGGGGGGGI  240
DGPMPAIPTL MTGGRGPRVG PPGPLSLAAV GGGAGTPTAS GADSGGGPGG PLALPPSGGL  300
GLGLGLQLGP GGGGGRGGGG GPMGYVGGPG DLGPGPGGWD GGPDDDMHGA GGPSLLLAGA  360
GGMGGGMGGG GGGGLYPTHS EPLPVGVGGG SAASSPRNLV QRRLGGVGSN SGHGGPGRRS  420
SLERMALLSV VADGKVVKQA SRRQSGSGSG GATPQALGLQ APGSPRGSGP RSPRALPRAM  480
ASPGGAAGRE GLLDSMWGGG SGGGPGQQRG GGVRGGMPGD GGWIGPPSGG VAGGSGPLGR  540
PHSPDLGPHM GGGGMPLQAL QSGGSGYGPA HSGGYGGPGG GGGDMGAGPG PGPGHYNDMS  600
GRGHHDSYGS APGSYGPNSA SGGGYGGPGG GGGGQGGGMG GYGGGGGRGG GYGPGPGGGG  660
GAPGGGGGGG LAAAGVNAIL GDADVAILAG LSHRPSLGME QLSAEELALL GIQGADRDLL  720
LDPIADASLD PLVDLLLLGD ALGGNGRGGP QGGGGGGGAA ADGYSAQRRI SEALAPLLGG  780
GVGGGLGGGG GGGGGGGGGY GGDVMAGPVG VSSLLRHPGG GGGGGGGGGL LAGVSAGGSV  840
SAPHRQHRLS SVTGAGGNGP QQRTSRFASS SLDGPQQHQQ VPQGQQHMQQ HPHQQHMQQQ  900
QQGPGGYGSR GPGLGPQRQY EDEPCGYGGS GGGGGGDGGG YGMDGGGGGG GGPGGYQSGM  960
GLGGMQAART SLHGLGGTAP GYGPGSGPGG GGGGGGSDYG RRMGGPGPGP GGLGGNPHAQ  1020
HLFTEGRHSA PGHIGIPGWD DQPGGGGGMG GPGPGGGGMA GGGGGGWHEG PDDCRSRGVQ  1080
GGMDSGLGPE GQFMGRGGGG GRGMATGYGG SGSGGGGGGW FDRGGGGGGG GGPMGSGSAG  1140
APPVPQQYRG GDYSGPGGGG GGGRGSMGGD VAGSAGARPS GMSAGGSQGQ GPMRRGMDPL  1200
DGDMPPAMGG RGAPPRRNSF SERMGPGGGG YGGGGGGGGG GGYGTGYGRP NTANGGPDSG  1260
GDWGDRGGGG VGGGGGSGQL GQPFSRQEQQ SAREQLARAM MRGGSSNGGG SGGPAALLAA  1320
QGQGGNSGGG AGSGRTHLSG ALTGGPTGPH GGVNSPPPET IASLQGLRLR NEMDDYGQRH  1380
PQHYQQHQQH QQHPHQRDMG GPGMEQQAYR QQHQQHQQHQ QQGPPHPHSH RRQQQQHDPP  1440
HGGYDGRQPY RGPPGGGGDG PRTGGRYNDG YGGPGGPGGG GGGGRYDAGP GGGRFEGGGG  1500
GGPGGGAGGG YYPGDPSGGR GAGPRRVSDS MSGGAGGGRG GGAGGPGGGA GGGPGGYYGG  1560
GPSPGPGAGG APRFSRTSDN MAVGGGGPGG GGPGPGPGGS GAGLLEALDH QLEGIDAFVD  1620
RNLDLLRRNS GGFGSFMAEM GLGRGDLGGL SFSGAGGMSF TGAGGGGGGG GPNGPGSSMS  1680
YGPGPDGVGG GAGPGGGGGA GLMGGLGSMD LETMRESLRR ELRQGSMEQW DDMVRGLGQP  1740
GPGGMGGGGM GGGGGGY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	985	996	SGPGGGGGGGGS
2	1491	1499	GGRFEGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre09.g387850.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001694534.1	0.0	RWP-RK transcription factor
TrEMBL	A0A2K3DDQ8	0.0	A0A2K3DDQ8_CHLRE; Uncharacterized protein
STRING	EDP02529	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-09	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cre09.g387850.t1.2